RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 DNAJA1P31689 397 aaKnown RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 RYKP34925 604 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 ACAA2P42765 397 aaKnown RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 DAPP51397 102 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 COPZ1P61923 177 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 PPP2R2BQ00005 443 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 HOXC5Q00444 222 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 MRPL49Q13405 166 aaKnown RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 PIN1Q13526 163 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 LAPTM4AQ15012 233 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 QPRTQ15274 297 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 SF3B4Q15427 424 aaKnown RBP eCLIP9.87□□□□□ -0.838e-8■■■■■ 30.6
SHMT2-218ENST00000555213 PLPPR5Q32ZL2 321 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 ZNF770Q6IQ21 691 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 SHQ1Q6PI26 577 aaKnown RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 ARSKQ6UWY0 536 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 LSRQ86X29 649 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 GRAMD2AQ8IUY3 354 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 PM20D2Q8IYS1 436 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 GTPBP8Q8N3Z3 284 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 PACRGLQ8N7B6 248 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 PIK3C3Q8NEB9 887 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 VANGL1Q8TAA9 524 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 FAM57AQ8TBR7 257 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 DNAJC9Q8WXX5 260 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 ST8SIA1Q92185 356 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 CNOT9Q92600 299 aaKnown RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 PROX1Q92786 737 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 ABTB1Q969K4 478 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 ZNF524Q96C55 264 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 NRBF2Q96F24 287 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 MRGPRX4Q96LA9 322 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 ZNF184Q99676 751 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 PIP5K1AQ99755 562 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 C9orf16Q9BUW7 83 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 NMNAT1Q9HAN9 279 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 MAN2C1Q9NTJ4 1040 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 USE1Q9NZ43 259 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 RHCGQ9UBD6 479 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 TMEFF2Q9UIK5 374 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-218ENST00000555213 SLC6A5Q9Y345 797 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 TESMINQ9Y4I5 508 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 U3KQV3 271 aa9.87□□□□□ -0.83
SHMT2-218ENST00000555213 TRGV8A0A0C4DH27 118 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 GJE1A6NN92 205 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 NPIPA2E9PIF3 369 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 NPIPA3F8WFD2 350 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 EI24O14681 340 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 OIP5O43482 229 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 ZIC3O60481 467 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 NTN1O95631 604 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 IFNW1P05000 195 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 GKN3PP0CG01 181 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 GP1BBP13224 206 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 ITGA2P17301 1181 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 FPR1P21462 350 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 ADH6P28332 368 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 RGS8P57771 180 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-218ENST00000555213 LSM11P83369 360 aaKnown RBP eCLIP9.86□□□□□ -0.83
SHMT2-218ENST00000555213 FOXF1Q12946 379 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 SEC23BQ15437 767 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 STK32CQ86UX6 486 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 CD163Q86VB7 1156 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 RANBP3LQ86VV4 465 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-218ENST00000555213 SVOPLQ8N434 492 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 MEIOBQ8N635 442 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 PRR7Q8TB68 274 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 GPR119Q8TDV5 335 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 EPYCQ99645 322 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 KLHDC3Q9BQ90 382 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 GABARAPL1Q9H0R8 117 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 TP63Q9H3D4 680 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-218ENST00000555213 SERINC1Q9NRX5 453 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 SPRR3Q9UBC9 169 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 OSGIN2Q9Y236 505 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 SLC9A8Q9Y2E8 581 aa9.86□□□□□ -0.83
SHMT2-218ENST00000555213 SPIN1Q9Y657 262 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-218ENST00000555213 TRBV4-1A0A0J9YWV2 114 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 OR2M5A3KFT3 312 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 B4DXG7 233 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 H3BML4 177 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 TNFRSF11BO00300 401 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 FAAHO00519 579 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 GNGT2O14610 69 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 DENRO43583 198 aaKnown RBP9.85□□□□□ -0.83
SHMT2-218ENST00000555213 WDR1O75083 606 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 PEPDP12955 493 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 GABRA1P14867 456 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 ZNF23P17027 643 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 PRKCAP17252 672 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 BMP7P18075 431 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 HTR2AP28223 471 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 PTGER4P35408 488 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 HTR3AP46098 478 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 UQCRFS1P47985 274 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 ALDH3A2P51648 485 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 GFRA1P56159 465 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 CRYZQ08257 329 aaKnown RBP9.85□□□□□ -0.83
SHMT2-218ENST00000555213 EPS8Q12929 822 aa9.85□□□□□ -0.83
SHMT2-218ENST00000555213 SELENBP1Q13228 472 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms