RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 LOC100506127A0A0U1RQW1 187 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 PRR23D1E9PI22 279 aaPredicted RBP24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 CPNE3O75131 537 aaKnown RBP24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 APOL3O95236 402 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 PPP1R3DO95685 299 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 IFNGP01579 166 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 PRR23D2P0DMB1 279 aaPredicted RBP24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 TGFBR1P36897 503 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 BMXP51813 675 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 NRG3P56975 720 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 FOXL2P58012 376 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 DESI1Q6ICB0 168 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 PRR23CQ6ZRP0 262 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 APCDD1LQ8NCL9 501 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 NUBPLQ8TB37 319 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 DACH2Q96NX9 599 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 TBL1XR1Q9BZK7 514 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 SLIRPQ9GZT3 109 aaKnown RBP24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 ADAM19Q9H013 955 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 NDUFB11Q9NX14 153 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 PCDHGB2Q9Y5G2 931 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 R4GN57 208 aa24.07■■□□□ 1.44
CCDC88C-205ENST00000553403 OR6C70A6NIJ9 312 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 FAM183AA6NL82 134 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 MEN1O00255 615 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 NDUFB5O43674 189 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 LIMS3P0CW19 117 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 LIMS4P0CW20 117 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 SLC1A3P43003 542 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF117Q03924 483 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 BMPERQ8N8U9 685 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 LIPHQ8WWY8 451 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 DTNBP1Q96EV8 351 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 SPSB2Q99619 263 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 PMF1-BGLAPU3KQ54 211 aa24.06■■□□□ 1.44
CCDC88C-205ENST00000553403 LDOC1O95751 146 aaPredicted RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 GP1BAP07359 652 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 CPEP16870 476 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF3P17036 446 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 SOX3P41225 446 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 GRK6P43250 576 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 ITGADQ13349 1161 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 EFR3AQ14156 821 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF362Q5T0B9 420 aaPredicted RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 PAPD4Q6PIY7 484 aaKnown RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 TMEM205Q6UW68 189 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 NUP54Q7Z3B4 507 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 MARCH3Q86UD3 253 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 OR4F15Q8NGB8 312 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF563Q8TA94 476 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 CENPOQ9BU64 300 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 RTN4RQ9BZR6 473 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 CCDC59Q9P031 241 aaKnown RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 TNFRSF10DQ9UBN6 386 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 C19orf25Q9UFG5 118 aaPredicted RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 SLC22A31A6NKX4 558 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 J3QRE1 110 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 FADS1O60427 444 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 MPLP40238 635 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 LPAL2Q16609 132 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 MRPL14Q6P1L8 145 aaKnown RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 DPY19L2P2Q6ZN68 376 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 DBX2Q6ZNG2 339 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 SHFQ7M4L6 423 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 ASCL5Q7RTU5 278 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 CPEB2Q7Z5Q1 589 aaKnown RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 ZBTB46Q86UZ6 589 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 PHC2Q8IXK0 858 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 SLC37A3Q8NCC5 494 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 OR8K3Q8NH51 312 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 PTP4A1Q93096 173 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 OTULINQ96BN8 352 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 SH3YL1Q96HL8 342 aaPredicted RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 LOXL4Q96JB6 756 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 SH3GL3Q99963 347 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 WDR77Q9BQA1 342 aaPredicted RBP24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 CHRNA9Q9UGM1 479 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 KLHL21Q9UJP4 597 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 A3GALT2U3KPV4 340 aa24.05■■□□□ 1.44
CCDC88C-205ENST00000553403 HEATR5AQ86XA9 2040 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 HCRTR2O43614 444 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 GPX5O75715 221 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 PSMA1P25786 263 aaKnown RBP24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 MST1P26927 711 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 ATP6V1E1P36543 226 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 MC2RQ01718 297 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 LCN10Q6JVE6 187 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 AMER2Q8N7J2 671 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF485Q8NCK3 441 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 OR5W2Q8NH69 310 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 LPAR4Q99677 370 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 CTRCQ99895 268 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 CRB3Q9BUF7 120 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 MED20Q9H944 212 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 FBXO8Q9NRD0 319 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 NXT1Q9UKK6 140 aaKnown RBP24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 STUB1Q9UNE7 303 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 NPFFR2Q9Y5X5 522 aa24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 ZFHX2Q9C0A1 2572 aaPredicted RBP24.04■■□□□ 1.44
CCDC88C-205ENST00000553403 LOC105378220A0A1B0GUY1 285 aaPredicted RBP24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms