RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 OIT3Q8WWZ8 545 aa11.8□□□□□ -0.52
CPSF6-204ENST00000547486 OR52E6Q96RD3 313 aa11.8□□□□□ -0.52
CPSF6-204ENST00000547486 PANX1Q96RD7 426 aa11.8□□□□□ -0.52
CPSF6-204ENST00000547486 SLC38A1Q9H2H9 487 aa11.8□□□□□ -0.52
CPSF6-204ENST00000547486 EXOSC3Q9NQT5 275 aaKnown RBP11.8□□□□□ -0.52
CPSF6-204ENST00000547486 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.8□□□□□ -0.52
CPSF6-204ENST00000547486 SLC6A13Q9NSD5 602 aa11.8□□□□□ -0.52
CPSF6-204ENST00000547486 CHRNA9Q9UGM1 479 aa11.8□□□□□ -0.52
CPSF6-204ENST00000547486 RNF115Q9Y4L5 304 aa11.8□□□□□ -0.52
CPSF6-204ENST00000547486 IGKV3D-15A0A087WSY6 115 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 TMEM120BA0PK00 339 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 AGAP5A6NIR3 686 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 OVOL3O00110 214 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 IGHV3-9P01782 118 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 KITP10721 976 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 CSNK2A1P68400 391 aaPredicted RBP11.79□□□□□ -0.52
CPSF6-204ENST00000547486 BSPH1Q075Z2 132 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 PDK3Q15120 406 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 STK11Q15831 433 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 GRINAQ7Z429 371 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 GALNT5Q7Z7M9 940 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 KIRREL3Q8IZU9 778 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 KBTBD8Q8NFY9 601 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 PNPT1Q8TCS8 783 aaKnown RBP11.79□□□□□ -0.52
CPSF6-204ENST00000547486 MGARPQ8TDB4 240 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 TRNT1Q96Q11 434 aaKnown RBP11.79□□□□□ -0.52
CPSF6-204ENST00000547486 POTEKPQ9BYX7 375 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 CXorf56Q9H5V9 222 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 ESRP2Q9H6T0 727 aaKnown RBP11.79□□□□□ -0.52
CPSF6-204ENST00000547486 MTHFD2LQ9H903 347 aaPredicted RBP11.79□□□□□ -0.52
CPSF6-204ENST00000547486 THAP1Q9NVV9 213 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 NAV3Q8IVL0 2385 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 FREM1Q5H8C1 2179 aa11.79□□□□□ -0.52
CPSF6-204ENST00000547486 TMED7-TICAM2A0A0A6YYA0 188 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 FAM171A2A8MVW0 826 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 HDAC3O15379 428 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 PGM3O95394 542 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 PMS2P2O95744 297 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 COX5AP20674 150 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 MVDP53602 400 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 FOXG1P55316 489 aaPredicted RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 ATP5J2P56134 94 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 RPS4XP62701 263 aaKnown RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 TNK1Q13470 666 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 PGGHGQ32M88 737 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 ZNF672Q499Z4 452 aaPredicted RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 LRRC74BQ6ZQY2 392 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 MAVSQ7Z434 540 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 ZNF100Q8IYN0 542 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 ZNF433Q8N7K0 673 aaPredicted RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 SMAP2Q8WU79 429 aaPredicted RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 USB1Q9BQ65 265 aaKnown RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 TRIM2Q9C040 744 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 NGBQ9NPG2 151 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 RLIMQ9NVW2 624 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 NPAP1Q9NZP6 1156 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 OSGIN1Q9UJX0 560 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 LIPT1Q9Y234 373 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 TMED7Q9Y3B3 224 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 HDGFL3Q9Y3E1 203 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 MAGED1Q9Y5V3 778 aaPredicted RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 SPIN1Q9Y657 262 aaPredicted RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 FN1P02751 2386 aaKnown RBP11.78□□□□□ -0.52
CPSF6-204ENST00000547486 USF3Q68DE3 2245 aa11.78□□□□□ -0.52
CPSF6-204ENST00000547486 TMEM72A0PK05 275 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 SHISA9B4DS77 424 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 TMCC2O75069 709 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 CD8AP01732 235 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 IMPDH2P12268 514 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 GGT1P19440 569 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 RPS4Y1P22090 263 aaKnown RBP11.77□□□□□ -0.53
CPSF6-204ENST00000547486 TACR3P29371 465 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 CDKN1AP38936 164 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 CLK1P49759 484 aaKnown RBP11.77□□□□□ -0.53
CPSF6-204ENST00000547486 OR2B6P58173 313 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 HPCAP84074 193 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 H3F3AP84243 136 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 PPA1Q15181 289 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 SLC9B1Q4ZJI4 515 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 TIMM23BQ5SRD1 257 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 FBXW9Q5XUX1 488 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 DNAJC14Q6Y2X3 702 aaPredicted RBP11.77□□□□□ -0.53
CPSF6-204ENST00000547486 UBE2J2Q8N2K1 259 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 TRIML2Q8N7C3 387 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 FBXW5Q969U6 566 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 TMEM181Q9P2C4 612 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 TRAPPC4Q9Y296 219 aa11.77□□□□□ -0.53
CPSF6-204ENST00000547486 NOSIPQ9Y314 301 aaKnown RBP11.77□□□□□ -0.53
CPSF6-204ENST00000547486 DNHD1Q96M86 4753 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 ZC3H12DA2A288 527 aaKnown RBP11.76□□□□□ -0.53
CPSF6-204ENST00000547486 OR5H1A6NKK0 313 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 TRPC5OSA6NMA1 111 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 RFXANKO14593 260 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 SLC22A3O75751 556 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 RAD51DO75771 328 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 NR2F1P10589 423 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 PTNP21246 168 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 FKBP2P26885 142 aaKnown RBP11.76□□□□□ -0.53
CPSF6-204ENST00000547486 PCSK6P29122 969 aa11.76□□□□□ -0.53
CPSF6-204ENST00000547486 SLC1A3P43003 542 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms