RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 DUXAA6NLW8 204 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ZNF724A8MTY0 619 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 TYROBPO43914 113 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 RAMP1O60894 148 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 SCN2BO60939 215 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 BCAS1O75363 584 aaPredicted RBP7.48□□□□□ -1.21
USP28-215ENST00000545608 STX11O75558 287 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 CSTAP01040 98 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 CD8AP01732 235 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 UBTFL6P0CB48 400 aaPredicted RBP7.48□□□□□ -1.21
USP28-215ENST00000545608 OR12D1P0DN82 309 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 IMPDH2P12268 514 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 IGHV1-2P23083 117 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 IDUAP35475 653 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ETV4P43268 484 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 DIO1P49895 249 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 VSNL1P62760 191 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 PHC1P78364 1004 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 BSPH1Q075Z2 132 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 IFFO1Q0D2I5 559 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 MERTKQ12866 999 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 FAPQ12884 760 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 VEZF1Q14119 521 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 STK11Q15831 433 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 MAPK14Q16539 360 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 PGGHGQ32M88 737 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ARHGAP11BQ3KRB8 267 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 HSP90B2PQ58FF3 399 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 HEPHL1Q6MZM0 1159 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 BHLHB9Q6PI77 547 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 TMPPEQ6ZT21 453 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 Q6ZT83 130 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 HMGN2P46Q86SG4 172 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ST8SIA1Q92185 356 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 RAB8BQ92930 207 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ZG16BQ96DA0 208 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 DNAJA3Q96EY1 480 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 TRMT61AQ96FX7 289 aaKnown RBP7.48□□□□□ -1.21
USP28-215ENST00000545608 SLC35G5Q96KT7 338 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 PPP1R36Q96LQ0 422 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 POTEKPQ9BYX7 375 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 REG4Q9BYZ8 158 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ROPN1BQ9BZX4 212 aaPredicted RBP7.48□□□□□ -1.21
USP28-215ENST00000545608 TRIM2Q9C040 744 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 C20orf27Q9GZN8 174 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ZNF350Q9GZX5 532 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 SLCO5A1Q9H2Y9 848 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 OR51I1Q9H343 314 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 PIF1Q9H611 641 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 AKTIPQ9H8T0 292 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ROPN1Q9HAT0 212 aaPredicted RBP7.48□□□□□ -1.21
USP28-215ENST00000545608 ACER3Q9NUN7 267 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 ASIC5Q9NY37 505 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 NPAP1Q9NZP6 1156 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 LIPT1Q9Y234 373 aa7.48□□□□□ -1.21
USP28-215ENST00000545608 CADP27708 2225 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 RNF103-CHMP3A0A140T963 221 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 A0A1W2PP18 115 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 PRAMEF27A3QJZ7 478 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 SHISA9B4DS77 424 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 SULT2B1O00204 365 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 RNASET2O00584 256 aaKnown RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 CRLF1O75462 422 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 PGM3O95394 542 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 CPSF4O95639 269 aaKnown RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 AK1P00568 194 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 IGHV3-9P01782 118 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 IGHV4-39P01824 125 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 C1QCP02747 245 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 FESP07332 822 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 PGCP20142 388 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 PTNP21246 168 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 EPHA1P21709 976 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 NTF4P34130 210 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 PGM1P36871 562 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 ACVR1BP36896 505 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 FUT5Q11128 374 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 MAD2L1Q13257 205 aaPredicted RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 PPA1Q15181 289 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 PDCD2Q16342 344 aaPredicted RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 SMU1Q2TAY7 513 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 SYT14P1Q58G82 188 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 TYW3Q6IPR3 259 aaKnown RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 C3orf33Q6P1S2 294 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 TNFAIP8L2Q6P589 184 aaPredicted RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 EIF3MQ7L2H7 374 aaKnown RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 C16orf62Q7Z3J2 963 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 REC114Q7Z4M0 266 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 GALNT5Q7Z7M9 940 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 MTDHQ86UE4 582 aaKnown RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 ANKRD46Q86W74 232 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 NUDCD3Q8IVD9 361 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 ZNF100Q8IYN0 542 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 ZNF433Q8N7K0 673 aaPredicted RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 ZNF781Q8N8C0 355 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 OR8J2Q8NGG1 315 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 OR4A15Q8NGL6 344 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 MIPOL1Q8TD10 442 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 XAGE5Q8WWM1 108 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 TMEM234Q8WY98 164 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms