RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 TMED7-TICAM2A0A0A6YYA0 188 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 IGHV3-15A0A0B4J1V0 119 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 SH3D21A4FU49 640 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 C16orf97H3BN30 126 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 YES1P07947 543 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 GKN3PP0CG01 181 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 CCNA2P20248 432 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 CXCR1P25024 350 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 UGT2B10P36537 528 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 SF3A3Q12874 501 aaKnown RBP eCLIP14.03□□□□□ -0.16
CCDC78-216ENST00000544996 NFYCQ13952 458 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 EXOC3L2Q2M3D2 409 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 RUNDC3AQ59EK9 446 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 WBP2NLQ6ICG8 309 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 BEND4Q6ZU67 534 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 TUSC5Q8IXB3 177 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 CLIP4Q8N3C7 705 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 CADM2Q8N3J6 435 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 DDIT4LQ96D03 193 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 ANKRD27Q96NW4 1050 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 CGREF1Q99674 301 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 CPPED1Q9BRF8 314 aaPredicted RBP14.03□□□□□ -0.16
CCDC78-216ENST00000544996 GPATCH1Q9BRR8 931 aaKnown RBP14.03□□□□□ -0.16
CCDC78-216ENST00000544996 POLDIP3Q9BY77 421 aaKnown RBP14.03□□□□□ -0.16
CCDC78-216ENST00000544996 CLEC4MQ9H2X3 399 aaPredicted RBP14.03□□□□□ -0.16
CCDC78-216ENST00000544996 C12orf49Q9H741 205 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 RASSF1Q9NS23 344 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 OSGIN1Q9UJX0 560 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 TMED7Q9Y3B3 224 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 TEX15Q9BXT5 2789 aa14.03□□□□□ -0.16
CCDC78-216ENST00000544996 ENO4A6NNW6 628 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 ZNF208O43345 1280 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 GOSR1O95249 250 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 PMS2P2O95744 297 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 FESP07332 822 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 ACAA2P42765 397 aaKnown RBP14.02□□□□□ -0.17
CCDC78-216ENST00000544996 RASGEF1BQ0VAM2 473 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 CYLC2Q14093 348 aaPredicted RBP14.02□□□□□ -0.17
CCDC78-216ENST00000544996 SCARB2Q14108 478 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 MAPRE2Q15555 327 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 CYP51A1Q16850 503 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 MTDHQ86UE4 582 aaKnown RBP14.02□□□□□ -0.17
CCDC78-216ENST00000544996 CDH24Q86UP0 819 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 RETREG3Q86VR2 466 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 SLC35B4Q969S0 331 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 ZNF607Q96SK3 696 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 MED18Q9BUE0 208 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 KLHL4Q9C0H6 718 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 OR11A1Q9GZK7 315 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 ADAM19Q9H013 955 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 IKZF5Q9H5V7 419 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 ZNF226Q9NYT6 803 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 TMEM181Q9P2C4 612 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 KLHL14Q9P2G3 628 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 TRAPPC4Q9Y296 219 aa14.02□□□□□ -0.17
CCDC78-216ENST00000544996 FBN2P35556 2912 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 PRORSD1PA6NEY8 169 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 SMAD9O15198 467 aaKnown RBP14.01□□□□□ -0.17
CCDC78-216ENST00000544996 DNPH1O43598 174 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 CYTIPO60759 359 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 SERPINB7O75635 380 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 PRKAR1BP31321 381 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 MMEL1Q495T6 779 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 CGB2Q6NT52 195 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 SERPINA11Q86U17 422 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 MED12LQ86YW9 2145 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 C10orf111Q8N326 155 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 C11orf65Q8NCR3 313 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 HIPK4Q8NE63 616 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 BHLHE22Q8NFJ8 381 aaPredicted RBP14.01□□□□□ -0.17
CCDC78-216ENST00000544996 ARL5BQ96KC2 179 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 SH3GL1Q99961 368 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 BCO1Q9HAY6 547 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 SAR1AQ9NR31 198 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 KLHL28Q9NXS3 571 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 EMC3Q9P0I2 261 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 SLC13A4Q9UKG4 626 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 EDARQ9UNE0 448 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 ANGPT4Q9Y264 503 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 APCP25054 2843 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 ABCA12Q86UK0 2595 aa14.01□□□□□ -0.17
CCDC78-216ENST00000544996 TMEM72A0PK05 275 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 FAM221AA4D161 298 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 EIF1BO60739 113 aaKnown RBP14□□□□□ -0.17
CCDC78-216ENST00000544996 PRG2P13727 222 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 ADSLP30566 484 aaPredicted RBP14□□□□□ -0.17
CCDC78-216ENST00000544996 OR2B6P58173 313 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 MTPNP58546 118 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 SLC35A1P78382 337 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 RBBP4Q09028 425 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 KLF10Q13118 480 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 ADRM1Q16186 407 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 TRMT5Q32P41 509 aaKnown RBP14□□□□□ -0.17
CCDC78-216ENST00000544996 COQ5Q5HYK3 327 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 WFIKKN1Q96NZ8 548 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 PSD2Q9BQI7 771 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 CHST2Q9Y4C5 530 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 TESMINQ9Y4I5 508 aa14□□□□□ -0.17
CCDC78-216ENST00000544996 ZNF724A8MTY0 619 aa13.99□□□□□ -0.17
CCDC78-216ENST00000544996 BBIP1A8MTZ0 92 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms