RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 LOC105369274A0A096LPK9 316 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 B3GALT2O43825 422 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 ATP1B1P05026 303 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 MRPL3P09001 348 aaKnown RBP12.67□□□□□ -0.38
VPS33A-208ENST00000543633 SNRPBP14678 240 aaKnown RBP12.67□□□□□ -0.38
VPS33A-208ENST00000543633 C5AR1P21730 350 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 NOS3P29474 1203 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 ACVR1BP36896 505 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 MAP3K8P41279 467 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 CCR9P51686 369 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 SLC16A1P53985 500 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 CLDN2P57739 230 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 ILF3Q12906 894 aaKnown RBP eCLIP12.67□□□□□ -0.388e-6■■□□□ 11.6
VPS33A-208ENST00000543633 SHHQ15465 462 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 LGALSLQ3ZCW2 172 aaPredicted RBP12.67□□□□□ -0.38
VPS33A-208ENST00000543633 SMUG1Q53HV7 270 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 OR4N4Q8N0Y3 316 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 COX18Q8N8Q8 333 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 RPS4Y2Q8TD47 263 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 ERMAPQ96PL5 475 aaPredicted RBP12.67□□□□□ -0.38
VPS33A-208ENST00000543633 CNN2Q99439 309 aaKnown RBP12.67□□□□□ -0.38
VPS33A-208ENST00000543633 ZNF436Q9C0F3 470 aaPredicted RBP12.67□□□□□ -0.38
VPS33A-208ENST00000543633 TWSG1Q9GZX9 223 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 DAPP1Q9UN19 280 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 SLC22A7Q9Y694 548 aa12.67□□□□□ -0.38
VPS33A-208ENST00000543633 A0A0B4J2E0 115 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 A0A1B0GX12 115 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 A0A1W2PRG6 482 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 OR52A4PA6NMU1 304 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 MID1O15344 667 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 SSNA1O43805 119 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 FUT1P19526 365 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 LCN1P31025 176 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 GDNFP39905 211 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 MNDAP41218 407 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 ZNF81P51508 661 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 EXOSC2Q13868 293 aaKnown RBP12.66□□□□□ -0.38
VPS33A-208ENST00000543633 ZSWIM7Q19AV6 140 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 OR6V1Q8N148 313 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 ZNF687Q8N1G0 1237 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 SPICQ8N5J4 248 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 KCT2Q8NC54 265 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 C15orf40Q8WUR7 153 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 HOXB13Q92826 284 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-208ENST00000543633 PELI1Q96FA3 418 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 PEX11GQ96HA9 241 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 UTP23Q9BRU9 249 aaKnown RBP12.66□□□□□ -0.38
VPS33A-208ENST00000543633 GSDMCQ9BYG8 508 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 NARFLQ9H6Q4 476 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 MEPEQ9NQ76 525 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-208ENST00000543633 OBP2AQ9NY56 170 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 RPS6KB2Q9UBS0 482 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 FBXL3Q9UKT7 428 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 MAB21L2Q9Y586 359 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 GABARAPH6UMI1 98 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 BRINP1O60477 761 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 PPP1R3DO95685 299 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 WNT1P04628 370 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 CA3P07451 260 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 GKN3PP0CG01 181 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 RRASP10301 218 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 POLR2CP19387 275 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-208ENST00000543633 DRD5P21918 477 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 VIPR2P41587 438 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 CCR6P51684 374 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 ZP1P60852 638 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 RAB14P61106 215 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 SIRPAP78324 504 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 LGALS3BPQ08380 585 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 FGL2Q14314 439 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 SLC35D3Q5M8T2 416 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 OLFML2AQ68BL7 652 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 RPTNQ6XPR3 784 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 COMMD7Q86VX2 200 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 COL26A1Q96A83 441 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 ZFP3Q96NJ6 502 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 C1QTNF7Q9BXJ2 289 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 SPRTNQ9H040 489 aaPredicted RBP12.66□□□□□ -0.38
VPS33A-208ENST00000543633 C12orf10Q9HB07 376 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 SPEF1Q9Y4P9 236 aa12.66□□□□□ -0.38
VPS33A-208ENST00000543633 TRAV27A0A087WT01 109 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 A0A1B0GVC2 190 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 OTOL1A6NHN0 477 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-208ENST00000543633 A6NIN4 97 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 TPD52L2O43399 206 aaKnown RBP12.65□□□□□ -0.38
VPS33A-208ENST00000543633 TNFSF14O43557 240 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 MT-ND4P03905 459 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 CPN1P15169 458 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 HOXD11P31277 338 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-208ENST00000543633 RPS11P62280 158 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS33A-208ENST00000543633 RPS21P63220 83 aaKnown RBP12.65□□□□□ -0.38
VPS33A-208ENST00000543633 POU6F2P78424 691 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-208ENST00000543633 PUDPQ08623 228 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 ENPP2Q13822 863 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 NUDT18Q6ZVK8 323 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 SSX6Q7RTT6 188 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 ADGRG3Q86Y34 549 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 SFTPA1Q8IWL2 248 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 DTX3Q8N9I9 347 aa12.65□□□□□ -0.38
VPS33A-208ENST00000543633 ZNF671Q8TAW3 534 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms