RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 LRRC20Q8TCA0 184 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 PNPT1Q8TCS8 783 aaKnown RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 FAM172AQ8WUF8 416 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 ZNRF4Q8WWF5 429 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 HTR3CQ8WXA8 447 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 FCGR1BQ92637 280 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 C16orf58Q96GQ5 468 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 DNAJC1Q96KC8 554 aaKnown RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 POM121L2Q96KW2 1035 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 LURAP1Q96LR2 239 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 PPP3R2Q96LZ3 170 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 ZNF285Q96NJ3 590 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 ZNF599Q96NL3 588 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 SERPINB11Q96P15 392 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 ZIM3Q96PE6 472 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 QKIQ96PU8 341 aaKnown RBP eCLIP2.77□□□□□ -1.97
USP28-210ENST00000542033 S1PR3Q99500 378 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 NAPGQ99747 312 aaPredicted RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 GPA33Q99795 319 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 RBM4BQ9BQ04 359 aaKnown RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 PELOQ9BRX2 385 aaKnown RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 TMEM175Q9BSA9 504 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 MTG1Q9BT17 334 aaPredicted RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 EDEM2Q9BV94 578 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 TPPP3Q9BW30 176 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 ZNF416Q9BWM5 594 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 CHID1Q9BWS9 393 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 GSDMCQ9BYG8 508 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 GFRA4Q9GZZ7 299 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 METTL9Q9H1A3 318 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 OR51M1Q9H341 326 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 Q9H521 79 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 TMBIM4Q9HC24 238 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 CENPMQ9NSP4 180 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 B3GNT2Q9NY97 397 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 COA4Q9NYJ1 87 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 CNOT2Q9NZN8 540 aaKnown RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 IFNKQ9P0W0 207 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 TMEM181Q9P2C4 612 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 EIF3KQ9UBQ5 218 aaKnown RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 BTNL2Q9UIR0 455 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 RAB23Q9ULC3 237 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 MGAT4BQ9UQ53 548 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 SLC9A8Q9Y2E8 581 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 MRPS7Q9Y2R9 242 aaKnown RBP2.77□□□□□ -1.97
USP28-210ENST00000542033 NAALAD2Q9Y3Q0 740 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 NUBP2Q9Y5Y2 271 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 ETV7Q9Y603 341 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 AUP1Q9Y679 476 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 RNF215Q9Y6U7 377 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 TRPM1Q7Z4N2 1603 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 FANCAO15360 1455 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 ADGRL1O94910 1474 aa2.77□□□□□ -1.97
USP28-210ENST00000542033 TRAPPC8Q9Y2L5 1435 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 MN1Q10571 1320 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 LAMC3Q9Y6N6 1575 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 A0A0J9YWU9 116 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 A0A0U1RRA0 63 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ATP6AP2A0A1C7CYW4 349 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ISPDA4D126 451 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SERINC4A6NH21 518 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 LINC00587B1AMM8 73 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ZNF732B4DXR9 585 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 NPIPA2E9PIF3 369 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 TOX3O15405 576 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 SLC31A2O15432 143 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CYTIPO60759 359 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 NDUFS6O75380 124 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 SPAG6O75602 509 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ZFAND5O76080 213 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 RHOBTB1O94844 696 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 TNFAIP8O95379 198 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SYNGR4O95473 234 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 DUS4LO95620 317 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 CPNE6O95741 557 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CSTAP01040 98 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 MBP02144 154 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 MT-ND2P03891 347 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CDK1P06493 297 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 IGFBP1P08833 259 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 IQCF3P0C7M6 154 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 LINC00614P0C842 121 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 TRAPPC2P0DI81 140 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 TRAPPC2BP0DI82 140 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 UMPSP11172 480 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 UQCRBP14927 111 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ETS2P15036 469 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 B4GALT1P15291 398 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CYP11B1P15538 503 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 TCN1P20061 433 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 CRABP1P29762 137 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 PRDX6P30041 224 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 OPRL1P41146 370 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 MAGEA1P43355 309 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 GNPDA1P46926 289 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CCL11P51671 97 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CEBPGP53567 150 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 HERV-K104P63124 156 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 KCNJ2P63252 427 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms