RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GK3PQ14409 553 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 IGFBP7Q16270 282 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 SGCBQ16585 318 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 SYT14P1Q58G82 188 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 ENTPD8Q5MY95 495 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 ASRGL1Q7L266 308 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 CD163Q86VB7 1156 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 ADGRG3Q86Y34 549 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 LACC1Q8IV20 430 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 OR6S1Q8NH40 331 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 POC1BQ8TC44 478 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 PHF10Q8WUB8 498 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 RELTQ969Z4 430 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 CPNE4Q96A23 557 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 C3orf49Q96BT1 292 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 CCDC124Q96CT7 223 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 PRRC1Q96M27 445 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 TM9SF2Q99805 663 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 CTPS2Q9NRF8 586 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 MCTS1Q9ULC4 181 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 HRH3Q9Y5N1 445 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 NOTCH2Q04721 2471 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 USP9XQ93008 2570 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 HEATR5AQ86XA9 2040 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 DNAJC13O75165 2243 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 SHANK1Q9Y566 2161 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 TRGV8A0A0C4DH27 118 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 A0A1B0GWA3 101 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 CD8B2A6NJW9 211 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 C17orf51A8MQB3 221 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 M0R3H8 397 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 EIF1BO60739 113 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 PDE5AO76074 875 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 PRKD3O94806 890 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 IGF2P01344 180 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 GPIP06744 558 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 PRG2P13727 222 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 RHCEP18577 417 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 RBM34P42696 430 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 CARD18P57730 90 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 RAC3P60763 192 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 CHRNB3Q05901 458 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 OR2A2Q6IF42 318 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 B3GNT6Q6ZMB0 384 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 ATG4DQ86TL0 474 aaPredicted RBP15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 CHERPQ8IWX8 916 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 OR2V1Q8NHB1 315 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 VANGL1Q8TAA9 524 aaPredicted RBP15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 ADAMTS16Q8TE57 1224 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 TMEM43Q9BTV4 400 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 PACSIN3Q9UKS6 424 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 OSGIN2Q9Y236 505 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 ENPP4Q9Y6X5 453 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 SVILO95425 2214 aa15.78■□□□□ 0.12
CLSTN3-210ENST00000540931 RP1L1Q8IWN7 2480 aaPredicted RBP15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 A0A087WUJ7 227 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 EIF1AYO14602 144 aaKnown RBP15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 ACOT8O14734 319 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 FRS3O43559 492 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 ADAM11O75078 769 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 SYNGR4O95473 234 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 PMS2P2O95744 297 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 FABP3P05413 133 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 TFPIP10646 304 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 HSF1Q00613 529 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 NPTX1Q15818 432 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 TMEM176BQ3YBM2 270 aaPredicted RBP15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 C4orf17Q53FE4 359 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 C1orf185Q5T7R7 199 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 NSUN5P2Q63ZY6 315 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 HBMQ6B0K9 141 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 ZNF585AQ6P3V2 769 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 DEF8Q6ZN54 512 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 TMPPEQ6ZT21 453 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 DOLPP1Q86YN1 238 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 SLC43A2Q8N370 569 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 WNT2BQ93097 391 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 TACO1Q9BSH4 297 aaKnown RBP15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 FNDC11Q9BVV2 318 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 TAPBPLQ9BX59 468 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 KLHL4Q9C0H6 718 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 IL1RAPQ9NPH3 570 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 KRCC1Q9NPI7 259 aaPredicted RBP15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 GLRX2Q9NS18 164 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 POMPQ9Y244 141 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 ZNF407Q9C0G0 2248 aa15.77■□□□□ 0.12
CLSTN3-210ENST00000540931 FREM3P0C091 2139 aa15.77■□□□□ 0.11
CLSTN3-210ENST00000540931 PRRC2CQ9Y520 2896 aaKnown RBP15.77■□□□□ 0.11
CLSTN3-210ENST00000540931 NCKAP5O14513 1909 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 GTF3C1Q12789 2109 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 AHSA1O95433 338 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 TCEA1P23193 301 aaKnown RBP15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 HTR2AP28223 471 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 MSX2P35548 267 aaPredicted RBP15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 TIMP3P35625 211 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 SLC35A1P78382 337 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 TTC33Q6PID6 262 aaPredicted RBP15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 PIWIL3Q7Z3Z3 882 aaKnown RBP15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 FGD2Q7Z6J4 655 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 VTCN1Q7Z7D3 282 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms