RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 C12orf71A8MTZ7 269 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 SOX1O00570 391 aaPredicted RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 HK1P19367 917 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 GTF2E2P29084 291 aaKnown RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 TGM4P49221 684 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 SHBQ15464 509 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 RFPL4BQ6ZWI9 263 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 KMT5CQ86Y97 462 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 CADM2Q8N3J6 435 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 OR4C6Q8NH72 309 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 ADIPOR1Q96A54 375 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 ISG20L2Q9H9L3 353 aaKnown RBP12.64□□□□□ -0.39
RTN3-210ENST00000540798 ADGRL4Q9HBW9 690 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 RPS6KB2Q9UBS0 482 aa12.64□□□□□ -0.39
RTN3-210ENST00000540798 TCRBV16S1A1N1A0A5B0 115 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 FRG2CA6NGY1 282 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 PTTG1O95997 202 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 PAICSP22234 425 aaKnown RBP12.63□□□□□ -0.39
RTN3-210ENST00000540798 NOS3P29474 1203 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 SDC2P34741 201 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 OR1D4P47884 311 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 RPS4XP62701 263 aaKnown RBP12.63□□□□□ -0.39
RTN3-210ENST00000540798 SKP2Q13309 424 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 CRMP1Q14194 572 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 WDR74Q6RFH5 385 aaPredicted RBP12.63□□□□□ -0.39
RTN3-210ENST00000540798 B3GLCTQ6Y288 498 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 TMPRSS11AQ6ZMR5 421 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 ZFP41Q8N8Y5 198 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 SYT14Q8NB59 555 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 SGTBQ96EQ0 304 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 MIXL1Q9H2W2 232 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 MKKSQ9NPJ1 570 aaPredicted RBP12.63□□□□□ -0.39
RTN3-210ENST00000540798 UBQLN4Q9NRR5 601 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 TOR4AQ9NXH8 423 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 POLHQ9Y253 713 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 GSTK1Q9Y2Q3 226 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 CMAHPQ9Y471 501 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 FER1L5A0AVI2 2057 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 IGKV1D-42A0A075B6H8 117 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 PPM1BO75688 479 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 ZNF3P17036 446 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 HNRNPA0Q13151 305 aaKnown RBP12.63□□□□□ -0.39
RTN3-210ENST00000540798 WDR45BQ5MNZ6 344 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 TMEM151BQ8IW70 566 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 TSLPQ969D9 159 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 EFHD2Q96C19 240 aaPredicted RBP12.63□□□□□ -0.39
RTN3-210ENST00000540798 ALG8Q9BVK2 526 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 BABAM2Q9NXR7 383 aa12.63□□□□□ -0.39
RTN3-210ENST00000540798 NDUFB2O95178 105 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 HLA-DPB1P04440 258 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 FOLR1P15328 257 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 LCN1P31025 176 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 RORAP35398 523 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 SEPHS1P49903 392 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 RUNX1T1Q06455 604 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 DMWDQ09019 674 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 ELAVL1Q15717 326 aaKnown RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 CD226Q15762 336 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 YOD1Q5VVQ6 348 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 LAX1Q8IWV1 398 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 ATP6V1C2Q8NEY4 427 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 LIPHQ8WWY8 451 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 NXF5Q9H1B4 397 aaKnown RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 GABRPO00591 440 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 SBK2P0C263 348 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 CD53P19397 219 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 ATP6V1E1P36543 226 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 CXCL12P48061 93 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 GGTLC2Q14390 218 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 ZNF79Q15937 498 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 ISXQ2M1V0 245 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 FCRLBQ6BAA4 426 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 TMEM91Q6ZNR0 172 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 KLBQ86Z14 1044 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 SLC38A6Q8IZM9 456 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 CADM3Q8N126 398 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 ZNF527Q8NB42 609 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 OR5M3Q8NGP4 307 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 CEP19Q96LK0 163 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 DDOQ99489 341 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 PNO1Q9NRX1 252 aaKnown RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 DHCR7Q9UBM7 475 aaKnown RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 KLHL21Q9UJP4 597 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 A0A1B0GVT2 93 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 TNFRSF10AO00220 468 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 CELP19835 753 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 PPM1FP49593 454 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 NKX2-5P52952 324 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 CSTF1Q05048 431 aaKnown RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 MXD1Q05195 221 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 POU4F2Q12837 409 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 GLYR1Q49A26 553 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 ATG4DQ86TL0 474 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 GATAD2AQ86YP4 633 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 OTULINQ96BN8 352 aa12.62□□□□□ -0.39
RTN3-210ENST00000540798 LCORQ96JN0 433 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 GPX7Q96SL4 187 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 SIRT4Q9Y6E7 314 aaPredicted RBP12.62□□□□□ -0.39
RTN3-210ENST00000540798 LAMA1P25391 3075 aa12.61□□□□□ -0.39
RTN3-210ENST00000540798 OIP5O43482 229 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms