RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 CGREF1Q99674 301 aa13.43□□□□□ -0.26
UBE3B-212ENST00000540230 PSD2Q9BQI7 771 aa13.43□□□□□ -0.26
UBE3B-212ENST00000540230 SPATA9Q9BWV2 254 aa13.43□□□□□ -0.26
UBE3B-212ENST00000540230 TIGARQ9NQ88 270 aa13.43□□□□□ -0.26
UBE3B-212ENST00000540230 SAR1AQ9NR31 198 aa13.43□□□□□ -0.26
UBE3B-212ENST00000540230 PLSCR4Q9NRQ2 329 aa13.43□□□□□ -0.26
UBE3B-212ENST00000540230 TMED7Q9Y3B3 224 aa13.43□□□□□ -0.26
UBE3B-212ENST00000540230 SPG11Q96JI7 2443 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 OTOGQ6ZRI0 2925 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 AKAP6Q13023 2319 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 ZC3H12DA2A288 527 aaKnown RBP13.42□□□□□ -0.26
UBE3B-212ENST00000540230 SH3D21A4FU49 640 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 A6NNC1 897 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 ZNF814B7Z6K7 855 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 C5orf58C9J3I9 102 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 ATP8B1O43520 1251 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 FESP07332 822 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 TFPIP10646 304 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 EPXP11678 715 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 POU2F1P14859 743 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 EDNRAP25101 427 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 AQP1P29972 269 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 SLC1A3P43003 542 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 HOXC5Q00444 222 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 KLF10Q13118 480 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 NFYCQ13952 458 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 SCARB2Q14108 478 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 LARS2Q15031 903 aaKnown RBP13.42□□□□□ -0.26
UBE3B-212ENST00000540230 PTOV1Q86YD1 416 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 TSPEARQ8WU66 669 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 C10orf82Q8WW14 230 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 REXO5Q96IC2 774 aaKnown RBP13.42□□□□□ -0.26
UBE3B-212ENST00000540230 ZNF300Q96RE9 604 aaPredicted RBP13.42□□□□□ -0.26
UBE3B-212ENST00000540230 SLC39A3Q9BRY0 314 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 ADAM19Q9H013 955 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 TMEM38AQ9H6F2 299 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 GLRX2Q9NS18 164 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 KLHL13Q9P2N7 655 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 ABCA4P78363 2273 aa13.42□□□□□ -0.26
UBE3B-212ENST00000540230 EVPLLA8MZ36 301 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 SULT2B1O00204 365 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 TPST1O60507 370 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 RAMP1O60894 148 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 ETS2P15036 469 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 KCNJ5P48544 419 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 POLR2HP52434 150 aaKnown RBP13.41□□□□□ -0.26
UBE3B-212ENST00000540230 RNPS1Q15287 305 aaKnown RBP13.41□□□□□ -0.26
UBE3B-212ENST00000540230 REEP3Q6NUK4 255 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 ZNF550Q7Z398 422 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 ZNF440Q8IYI8 595 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 CADM2Q8N3J6 435 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 ZNF775Q96BV0 537 aaPredicted RBP13.41□□□□□ -0.26
UBE3B-212ENST00000540230 RASSF1Q9NS23 344 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 KLHL28Q9NXS3 571 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 KLHL14Q9P2G3 628 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 IFT52Q9Y366 437 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 TESMINQ9Y4I5 508 aa13.41□□□□□ -0.26
UBE3B-212ENST00000540230 SPIN1Q9Y657 262 aaPredicted RBP13.41□□□□□ -0.26
UBE3B-212ENST00000540230 FXYD1O00168 92 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 CYTIPO60759 359 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 PRKD3O94806 890 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 IMPDH2P12268 514 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 UGT2B10P36537 528 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 HTR3AP46098 478 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 BNIP2Q12982 314 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 DAZAP2Q15038 168 aaPredicted RBP13.4□□□□□ -0.26
UBE3B-212ENST00000540230 POU4F3Q15319 338 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 ANKRD34AQ69YU3 496 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 GTF2IRD2BQ6EKJ0 949 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 ABLIM2Q6H8Q1 611 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 TFAP2EQ6VUC0 442 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.4□□□□□ -0.26
UBE3B-212ENST00000540230 GTF2IRD2Q86UP8 949 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 WFIKKN1Q96NZ8 548 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 WFDC6Q9BQY6 131 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 LIME1Q9H400 295 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 BCO1Q9HAY6 547 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 ZNF232Q9UNY5 417 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 CORO2BQ9UQ03 480 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 ANKRD17O75179 2603 aaKnown RBP13.4□□□□□ -0.26
UBE3B-212ENST00000540230 MYO9AB2RTY4 2548 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 PRR14LQ5THK1 2151 aa13.4□□□□□ -0.26
UBE3B-212ENST00000540230 A0A1W2PPR1 153 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 SIAH2O43255 324 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 GCM2O75603 506 aaPredicted RBP13.39□□□□□ -0.27
UBE3B-212ENST00000540230 PMS2P2O95744 297 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 RASGEF1BQ0VAM2 473 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 TMEM201Q5SNT2 666 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 REP15Q6BDI9 236 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 STAC2Q6ZMT1 411 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 CDH24Q86UP0 819 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 SLC43A2Q8N370 569 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 C3orf49Q96BT1 292 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 DACH2Q96NX9 599 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 PRR14Q9BWN1 585 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 POLDIP3Q9BY77 421 aaKnown RBP13.39□□□□□ -0.27
UBE3B-212ENST00000540230 KLHL4Q9C0H6 718 aa13.39□□□□□ -0.27
UBE3B-212ENST00000540230 CLEC4MQ9H2X3 399 aaPredicted RBP13.39□□□□□ -0.27
UBE3B-212ENST00000540230 KAT8Q9H7Z6 458 aaKnown RBP13.39□□□□□ -0.27
UBE3B-212ENST00000540230 CACYBPQ9HB71 228 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms