RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 METTL21EPA6NDL7 271 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 CCDC182A6NF36 153 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 PP2D1A8MPX8 630 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 TRDCB7Z8K6 153 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 PFKFB2O60825 505 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 B3GAT3O94766 335 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 AP2A1O95782 977 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 LGALS2P05162 132 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 ABOP16442 354 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 TPSB2P20231 275 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 NT5EP21589 574 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 UQCRC2P22695 453 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 SLC2A5P22732 501 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 COX7A1P24310 79 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 IL12AP29459 219 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 GNA11P29992 359 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 CALCRP30988 508 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 CD80P33681 288 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 EPS15P42566 896 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 CEBPDP49716 269 aaPredicted RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 GPM6AP51674 278 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 HNRNPA3P51991 378 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 GBX2P52951 348 aaPredicted RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 TPSAB1Q15661 275 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 C9orf129Q5T035 196 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 CES3Q6UWW8 571 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 PPP1R42Q7Z4L9 355 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 NBPF5PQ86XG9 351 aaPredicted RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 GRAMD2AQ8IUY3 354 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 ERI1Q8IV48 349 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 FTMTQ8N4E7 242 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 FAM133AQ8N9E0 248 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 ZNF540Q8NDQ6 660 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 ZNF740Q8NDX6 193 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 OR5L2Q8NGL0 311 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 OR2T34Q8NGX1 318 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 FBXO30Q8TB52 745 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 DCUN1D4Q92564 292 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 STMN2Q93045 179 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 HAVCR1Q96D42 359 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 CELF6Q96J87 481 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 PGLYRP4Q96LB8 373 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 TGM7Q96PF1 710 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 HIST1H4GQ99525 98 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 ZNF184Q99676 751 aaPredicted RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 MCHR1Q99705 422 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 CITED1Q99966 193 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 NAT9Q9BTE0 207 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 SRXN1Q9BYN0 137 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 ZDHHC11Q9H8X9 412 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 SLC25A22Q9H936 323 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 LRRC40Q9H9A6 602 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 CALHM2Q9HA72 323 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 KCNIP1Q9NZI2 227 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 COX16Q9P0S2 106 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 WRAP73Q9P2S5 460 aaPredicted RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 NUFIP1Q9UHK0 495 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 RIMS3Q9UJD0 308 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 NAP1L2Q9ULW6 460 aaPredicted RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 PRPF19Q9UMS4 504 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 AK6Q9Y3D8 172 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 RPL36Q9Y3U8 105 aaKnown RBP1.94□□□□□ -2.1
CD44-238ENST00000534296 SLCO1B1Q9Y6L6 691 aa1.94□□□□□ -2.1
CD44-238ENST00000534296 IGHV1OR15-1A0A075B7D0 117 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 A0A1B0GUS0 222 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 A0A1B0GWB2 263 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 WI2-2373I1.2A0A1W2PRP0 233 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ESYT2A0FGR8 921 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CLRN2A0PK11 232 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 LRP5LA4QPB2 252 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 DYNC1I1O14576 645 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ARPC3O15145 178 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 EMC8O43402 210 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CXCL13O43927 109 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ATP5LO75964 103 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 NEBLO76041 1014 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 DIRAS1O95057 198 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 IGHV3-23P01764 117 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 GIPP09681 153 aaPredicted RBP1.93□□□□□ -2.1
CD44-238ENST00000534296 RBMY1CP0DJD4 496 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 HPGDP15428 266 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 IGLL1P15814 213 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 POLR2EP19388 210 aaKnown RBP1.93□□□□□ -2.1
CD44-238ENST00000534296 ELK1P19419 428 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CYP2B6P20813 491 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 GLRA2P23416 452 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 PRDX3P30048 256 aaKnown RBP1.93□□□□□ -2.1
CD44-238ENST00000534296 SHMT2P34897 504 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 BTDP43251 543 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ARFIP1P53367 373 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 LIM2P55344 173 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 MAP2K1Q02750 393 aaPredicted RBP1.93□□□□□ -2.1
CD44-238ENST00000534296 TLE4Q04727 773 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ZMYND11Q15326 602 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 KLHL38Q2WGJ6 581 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 GGTA1PQ4G0N0 100 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CCDC152Q4G0S7 254 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 TP53I3Q53FA7 332 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 C1orf146Q5VVC0 180 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 TIGD3Q6B0B8 471 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms