RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 HOXC5Q00444 222 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 TRAP1Q12931 704 aaKnown RBP13□□□□□ -0.33
CPSF1-206ENST00000531480 TMEM211Q6ICI0 200 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 B3GNT6Q6ZMB0 384 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 C3P1Q6ZMU1 363 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 ATG4DQ86TL0 474 aaPredicted RBP13□□□□□ -0.33
CPSF1-206ENST00000531480 FJX1Q86VR8 437 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 RNF148Q8N7C7 305 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 OR6T1Q8NGN1 323 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 SLC26A7Q8TE54 656 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 FIG4Q92562 907 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 STMN2Q93045 179 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 CCDC120Q96HB5 630 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 KLHL15Q96M94 604 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 ZNF559Q9BR84 538 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 CADM1Q9BY67 442 aaKnown RBP13□□□□□ -0.33
CPSF1-206ENST00000531480 TRIM2Q9C040 744 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 COQ10BQ9H8M1 238 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 SERINC1Q9NRX5 453 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 DCAF13Q9NV06 445 aaKnown RBP13□□□□□ -0.33
CPSF1-206ENST00000531480 PAQR5Q9NXK6 330 aaPredicted RBP13□□□□□ -0.33
CPSF1-206ENST00000531480 ZNF175Q9Y473 711 aa13□□□□□ -0.33
CPSF1-206ENST00000531480 TMED7-TICAM2A0A0A6YYA0 188 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 A0A0B4J2E0 115 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 A0A1B0GX12 115 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 CLCA1A8K7I4 914 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 H0Y3Z8 333 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 M0R3H8 397 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 FZD7O75084 574 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 NPIPB7O75200 414 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 TOXO94900 526 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 AGAP20933 346 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 LRRC23Q53EV4 343 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 SYT14P1Q58G82 188 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 SWT1Q5T5J6 900 aaKnown RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 RIPPLY2Q5TAB7 128 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 GLYATQ6IB77 296 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 ZNF613Q6PF04 617 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 RPTNQ6XPR3 784 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 RANBP3LQ86VV4 465 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 TSPYL5Q86VY4 417 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 FAM156AQ8NDB6 213 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 OR10D3Q8NH80 312 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 OR2V1Q8NHB1 315 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 DNAJA4Q8WW22 397 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 WNT2BQ93097 391 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 LRGUKQ96M69 825 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 POLR2J2Q9GZM3 115 aaKnown RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 POLR2J3Q9H1A7 115 aaKnown RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 EGFL7Q9UHF1 273 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 MAGEL2Q9UJ55 1249 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 SH3BGRL2Q9UJC5 107 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 SLC13A4Q9UKG4 626 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 PACSIN3Q9UKS6 424 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 SLC9A8Q9Y2E8 581 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 TMED7Q9Y3B3 224 aa12.99□□□□□ -0.33
CPSF1-206ENST00000531480 SPIN1Q9Y657 262 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-206ENST00000531480 COL12A1Q99715 3063 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 A0A1B0GWA3 101 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 GSTA4O15217 222 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 LYPD3O95274 346 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 NCK1P16333 377 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 PER3P56645 1201 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 NUP107P57740 925 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 RPS3AP61247 264 aaKnown RBP12.98□□□□□ -0.33
CPSF1-206ENST00000531480 SRYQ05066 204 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 OR1Q1Q15612 314 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 TMEM176BQ3YBM2 270 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-206ENST00000531480 C1orf146Q5VVC0 180 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 PGM2L1Q6PCE3 622 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 ULK3Q6PHR2 472 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 LINC00114Q6XXX2 140 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 RBM45Q8IUH3 476 aaKnown RBP12.98□□□□□ -0.33
CPSF1-206ENST00000531480 UBQLNLQ8IYU4 475 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 LZICQ8WZA0 190 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 PROX1Q92786 737 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 SLC38A4Q969I6 547 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 ZFP3Q96NJ6 502 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 POTEKPQ9BYX7 375 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 TMEM185BQ9H7F4 350 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 ADPRHL2Q9NX46 363 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 TRAPPC4Q9Y296 219 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 HDGFL3Q9Y3E1 203 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 SNX13Q9Y5W8 968 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 INTS1Q8N201 2190 aaKnown RBP12.98□□□□□ -0.33
CPSF1-206ENST00000531480 MAST4O15021 2626 aa12.98□□□□□ -0.33
CPSF1-206ENST00000531480 TMEM72A0PK05 275 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 EIF1AYO14602 144 aaKnown RBP12.97□□□□□ -0.33
CPSF1-206ENST00000531480 TNFSF11O14788 317 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 ARPC2O15144 300 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 SEC14L5O43304 696 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 DNPH1O43598 174 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 RCBTB2O95199 551 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 PMS2P2O95744 297 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 SERPINA1P01009 418 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 THY1P04216 161 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 SFTPDP35247 375 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 RAC3P60763 192 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 PMPCAQ10713 525 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 TRIM25Q14258 630 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms