RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 OR4N5Q8IXE1 308 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 OR52B4Q8NGK2 314 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 ADAMTS15Q8TE58 950 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 MS4A6EQ96DS6 147 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 MRPS24Q96EL2 167 aaKnown RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 OR7D2Q96RA2 312 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 CAPN10Q9HC96 672 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 KLK11Q9UBX7 282 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 DPP7Q9UHL4 492 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 ADAM29Q9UKF5 820 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 SELENOFO60613 162 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 TBX19O60806 448 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 THY1P04216 161 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 ATXN8OSP0DMR3 200 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 GJA4P35212 333 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 IFNGR2P38484 337 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 CCR9P51686 369 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 RAG2P55895 527 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 SHC2P98077 582 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 PGGHGQ32M88 737 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 AGBL4Q5VU57 503 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 ABHD17CQ6PCB6 329 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 CXXC5Q7LFL8 322 aaKnown RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 SERPINA12Q8IW75 414 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 RELL2Q8NC24 303 aaPredicted RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 AHCYL2Q96HN2 611 aaKnown RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 CCDC86Q9H6F5 360 aaKnown RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 EVA1AQ9H8M9 152 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 SCPEP1Q9HB40 452 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 HRASLSQ9HDD0 168 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 POLMQ9NP87 494 aaPredicted RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 NANSQ9NR45 359 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 GRXCR1A8MXD5 290 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 GALR3O60755 368 aaPredicted RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 F8A1P23610 371 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 FRKP42685 505 aaPredicted RBP13.13□□□□□ -0.31
USP48-213ENST00000529637 C2orf68Q2NKX9 166 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 TMEM35AQ53FP2 167 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 ACSM3Q53FZ2 586 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 C6orf132Q5T0Z8 1188 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 KCT2Q8NC54 265 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 SLC6A17Q9H1V8 727 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 LTBP2Q14767 1821 aa13.13□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3DA0A087WVF3 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3IA0A087WXS9 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3EA0A087X179 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3KA0A087X1G2 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 DAPL1A0PJW8 107 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3FA6NER0 549 aaPredicted RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3LB9A6J9 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 J3QLW9 94 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 FCMRO60667 390 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 IGF2P01344 180 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3HP0C7X1 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 ZNF19P17023 458 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 RAB3AP20336 220 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 RAB3BP20337 219 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 PSMB1P20618 241 aaKnown RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 SLC16A1P53985 500 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 OR12D2P58182 307 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 UBE2MP61081 183 aaKnown RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 ID2Q02363 134 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 C2orf27AQ580R0 203 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 FCRLBQ6BAA4 426 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3GQ6DHY5 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3CQ6IPX1 549 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TBC1D3Q8IZP1 549 aaPredicted RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 OR56A1Q8NGH5 318 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 PIGXQ8TBF5 258 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TMEM255BQ8WV15 326 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 SLC6A20Q9NP91 592 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 EXOSC3Q9NQT5 275 aaKnown RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 IL20Q9NYY1 176 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 AK6Q9Y3D8 172 aaKnown RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 PCDHGA5Q9Y5G8 931 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 A0A0G2JPF8 293 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 A0A1W2PQU0 124 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 HNRNPCL3B7ZW38 293 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 AIPO00170 330 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 PTP4A3O75365 173 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TGM6O95932 706 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 HNRNPCL4P0DMR1 293 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 GALP22466 123 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 CLDN2P57739 230 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 PSMA6P60900 246 aaKnown RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 DEFA5Q01523 94 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 RUNX3Q13761 415 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 TRAM2Q15035 370 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 HACD4Q5VWC8 232 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 SLC22A10Q63ZE4 541 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 LINGO2Q7L985 606 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 CLRN3Q8NCR9 226 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 OR2L5Q8NG80 312 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 LCN9Q8WX39 176 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 HERVK_113Q902F9 699 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 ACTR6Q9GZN1 396 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 ARL6Q9H0F7 186 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 C6orf106Q9H6K1 298 aaPredicted RBP13.12□□□□□ -0.31
USP48-213ENST00000529637 THAP10Q9P2Z0 257 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms