RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SCG5P05408 212 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 ENDOUP21128 410 aaKnown RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 SLC6A6P31641 620 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 SLC1A3P43003 542 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 SLC9A3P48764 834 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 SSX1Q16384 188 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 TSTQ16762 297 aaKnown RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 ELOA3BQ3SY89 546 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 PLBD1Q6P4A8 553 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 LRRC17Q8N6Y2 441 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 ELOA3Q8NG57 546 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 OR8K3Q8NH51 312 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 SH3YL1Q96HL8 342 aaPredicted RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 LRFN3Q9BTN0 628 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 C12orf10Q9HB07 376 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 ZBTB20Q9HC78 741 aaPredicted RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 LRRN3E7EW58 273 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 CDX4O14627 284 aaPredicted RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 OR7A10O76100 309 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 PPP1R3DO95685 299 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 PEPDP12955 493 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 EVI2BP34910 448 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 TGFBR1P36897 503 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 NRG3P56975 720 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 SLC26A5P58743 744 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 FAM199XQ6PEV8 388 aaPredicted RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 GID4Q8IVV7 300 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 DYNC2LI1Q8TCX1 351 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 PTP4A1Q93096 173 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 C8orf44Q96CB5 159 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 H2AFY2Q9P0M6 372 aaPredicted RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 NXT1Q9UKK6 140 aaKnown RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 TRBV11-1A0A0K0K1C0 115 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 CCRL2O00421 344 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 MYL12BO14950 172 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 CLPXO76031 633 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 KLK3P07288 261 aaPredicted RBP18.89■□□□□ 0.61
VPS28-209ENST00000528142 CCKBRP32239 447 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 NIPAL3Q6P499 406 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 ZNF563Q8TA94 476 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 LIPHQ8WWY8 451 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 HCAR1Q9BXC0 346 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 OR51E2Q9H255 320 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 C19orf25Q9UFG5 118 aaPredicted RBP18.89■□□□□ 0.61
VPS28-209ENST00000528142 EXOSC1Q9Y3B2 195 aaKnown RBP18.89■□□□□ 0.61
VPS28-209ENST00000528142 ZNF337Q9Y3M9 751 aa18.89■□□□□ 0.61
VPS28-209ENST00000528142 TMEM129A0AVI4 362 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 M0R3G1 203 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 NDUFB2O95178 105 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 NADKO95544 446 aaPredicted RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 LIMS3P0CW19 117 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 LIMS4P0CW20 117 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 MYL12AP19105 171 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 TACR3P29371 465 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 UGT2B10P36537 528 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 CLK1P49759 484 aaKnown RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 EGR4Q05215 589 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 FAM198BQ6UWH4 519 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 ZNF517Q6ZMY9 492 aaPredicted RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 SHFQ7M4L6 423 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 HEATR5AQ86XA9 2040 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 OR5W2Q8NH69 310 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 MED20Q9H944 212 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 CHRNA9Q9UGM1 479 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 B4E171 279 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 INHBBP09529 407 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 TSPAN7P41732 249 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 RPS4XP62701 263 aaKnown RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 MLLT11Q13015 90 aaPredicted RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 ITGADQ13349 1161 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 EFR3AQ14156 821 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 TOMM34Q15785 309 aaPredicted RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 FAM69BQ5VUD6 431 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 MEPCEQ7L2J0 689 aaKnown RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 OR4F15Q8NGB8 312 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 OR5L2Q8NGL0 311 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 OR5M3Q8NGP4 307 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 THAP3Q8WTV1 239 aaPredicted RBP18.88■□□□□ 0.61
VPS28-209ENST00000528142 ZNF649Q9BS31 505 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 SLC39A1Q9NY26 324 aa18.88■□□□□ 0.61
VPS28-209ENST00000528142 LOC102723996A0A087X1L8 192 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 J3QRE1 110 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 WWP2O00308 870 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 SCO2O43819 266 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 IGHA1P01876 353 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 HK1P19367 917 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 C1DQ13901 141 aaKnown RBP18.87■□□□□ 0.61
VPS28-209ENST00000528142 ZNF74Q16587 644 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 FCRLBQ6BAA4 426 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 ARHGAP11AQ6P4F7 1023 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 SLC37A3Q8NCC5 494 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 ZNF485Q8NCK3 441 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 HGDQ93099 445 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 MR1Q95460 341 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 KISS1RQ969F8 398 aaPredicted RBP18.87■□□□□ 0.61
VPS28-209ENST00000528142 DEPDC7Q96QD5 511 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 JAM3Q9BX67 310 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 ULBP3Q9BZM4 244 aa18.87■□□□□ 0.61
VPS28-209ENST00000528142 CHCHD3Q9NX63 227 aaKnown RBP18.87■□□□□ 0.61
VPS28-209ENST00000528142 GPN3Q9UHW5 284 aaPredicted RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms