RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	OR5D16	Q8NGK9	328 aa		13.8	□□□□□ -0.2
LMNA-223	ENST00000515459	ACER3	Q9NUN7	267 aa		13.8	□□□□□ -0.2
LMNA-223	ENST00000515459	ATAD3A	Q9NVI7	634 aa		13.8	□□□□□ -0.2
LMNA-223	ENST00000515459	DNPH1	O43598	174 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	KIAA0513	O60268	411 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	TGFA	P01135	160 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	UBTFL6	P0CB48	400 aa	Predicted RBP	13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	MAPK1	P28482	360 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	CRHR1	P34998	444 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	MAGEA8	P43361	318 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	SWI5	Q1ZZU3	235 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	C1QTNF12	Q5T7M4	302 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	BHLHB9	Q6PI77	547 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	WDR31	Q8NA23	367 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	C1orf162	Q8NEQ5	155 aa	Predicted RBP	13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	OR52E4	Q8NGH9	312 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	OR5AK3P	Q8NH89	298 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	FBXO17	Q96EF6	278 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	SORCS2	Q96PQ0	1159 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	CCDC106	Q9BWC9	280 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	MYOZ1	Q9NP98	299 aa	Predicted RBP	13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	SLC17A5	Q9NRA2	495 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	UPB1	Q9UBR1	384 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	CHRNA9	Q9UGM1	479 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	KCNE5	Q9UJ90	142 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	DCTN4	Q9UJW0	460 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	HDGFL3	Q9Y3E1	203 aa		13.79	□□□□□ -0.2
LMNA-223	ENST00000515459	LOC390937	A0A1W2PQ73	354 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	DUXA	A6NLW8	204 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	ATP6V1G2-DDX39B	F2Z307	99 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	PDLIM1	O00151	329 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	ANKRD28	O15084	1053 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	CFLAR	O15519	480 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	FCMR	O60667	390 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	STX11	O75558	287 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	UGT2B17	O75795	530 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	AK1	P00568	194 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	FKBP2	P26885	142 aa	Known RBP	13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	TGFBR3	Q03167	851 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	PTGR1	Q14914	329 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	CARTPT	Q16568	116 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	MST1L	Q2TV78	715 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	IQCC	Q4KMZ1	466 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	C9orf135	Q5VTT2	229 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	CASP12	Q6UXS9	341 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	EIF3M	Q7L2H7	374 aa	Known RBP	13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	CCDC103	Q8IW40	242 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	ZNF563	Q8TA94	476 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	TWIST2	Q8WVJ9	160 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	DNAJA3	Q96EY1	480 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	ARL5B	Q96KC2	179 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	PPP3R2	Q96LZ3	170 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	FOXN4	Q96NZ1	517 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	PRPF18	Q99633	342 aa	Known RBP	13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	C12orf65	Q9H3J6	166 aa	Known RBP	13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	CTPS2	Q9NRF8	586 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	PARPBP	Q9NWS1	579 aa		13.78	□□□□□ -0.2
LMNA-223	ENST00000515459	IGHV4-61	A0A0C4DH41	118 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	CENPVL1	A0A0U1RR11	272 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	LYPLA1	O75608	230 aa	Predicted RBP	13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	FGF4	P08620	206 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	MATN1	P21941	496 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	CLK1	P49759	484 aa	Known RBP	13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	PRPS1	P60891	318 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	SNRPD2	P62316	118 aa	Known RBP	13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	RPS26	P62854	115 aa	Known RBP	13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC25A3	Q00325	362 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	ARHGAP11B	Q3KRB8	267 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	GRINA	Q7Z429	371 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	C10orf107	Q8IVU9	208 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	RFLNB	Q8N5W9	214 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	ZNF540	Q8NDQ6	660 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	MNS1	Q8NEH6	495 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	COQ8B	Q96D53	544 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	GATA5	Q9BWX5	397 aa	Predicted RBP	13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC7A10	Q9NS82	523 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	GIMAP2	Q9UG22	337 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	MKLN1	Q9UL63	735 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	MOK	Q9UQ07	419 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC9A8	Q9Y2E8	581 aa		13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
LMNA-223	ENST00000515459	TMEM233	B4DJY2	109 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	PIP5K1B	O14986	540 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	TCF21	O43680	179 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	TRIM13	O60858	407 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	PEX11A	O75192	247 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	WNT11	O96014	354 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	ZNF23	P17027	643 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	SOAT1	P35610	550 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	PGM1	P36871	562 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	OR2B6	P58173	313 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	HBA1	P69905	142 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	H3F3A	P84243	136 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	CR1L	Q2VPA4	569 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	UGT3A2	Q3SY77	523 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	KLHL24	Q6TFL4	600 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC46A3	Q7Z3Q1	461 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	KRTCAP2	Q8N6L1	136 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	FAM71C	Q8NEG0	241 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	VRK1	Q99986	396 aa	Predicted RBP	13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms