RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 B2RBV5 119 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 GMNNO75496 209 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 TOXO94900 526 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 CLDN14O95500 239 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 IL18BPO95998 194 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 OPN1SWP03999 348 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 OPN1LWP04000 364 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 CRHP06850 196 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 FESP07332 822 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 PRG2P13727 222 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 CD247P20963 164 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 CXCR1P25024 350 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 CTSSP25774 331 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 RAC3P60763 192 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 CSNK2A1P68400 391 aaPredicted RBP12.81□□□□□ -0.36
NUP54-216ENST00000514901 PON3Q15166 354 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 NRF1Q16656 503 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 GLIPR1L2Q4G1C9 344 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 SYT14P1Q58G82 188 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 SAMD4BQ5PRF9 694 aaKnown RBP12.81□□□□□ -0.36
NUP54-216ENST00000514901 GTF2IRD2BQ6EKJ0 949 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 POMZP3Q6PJE2 187 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 TMPPEQ6ZT21 453 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 NCCRP1Q6ZVX7 275 aaPredicted RBP12.81□□□□□ -0.36
NUP54-216ENST00000514901 GTF2IRD2Q86UP8 949 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 MED12LQ86YW9 2145 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 C9orf106Q8NAJ2 232 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 OR52E4Q8NGH9 312 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 DNAJA4Q8WW22 397 aaPredicted RBP12.81□□□□□ -0.36
NUP54-216ENST00000514901 LZICQ8WZA0 190 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 CPNE4Q96A23 557 aaPredicted RBP12.81□□□□□ -0.36
NUP54-216ENST00000514901 DDIT4LQ96D03 193 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 ARHGDIGQ99819 225 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 PRRG4Q9BZD6 226 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 SELENONQ9NZV5 590 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 USP22Q9UPT9 525 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 SLC9A8Q9Y2E8 581 aa12.81□□□□□ -0.36
NUP54-216ENST00000514901 KLF2Q9Y5W3 355 aaPredicted RBP12.81□□□□□ -0.36
NUP54-216ENST00000514901 CACNA1CQ13936 2221 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 CXCR6O00574 342 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 DVL2O14641 736 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 FRS3O43559 492 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 CXCL13O43927 109 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 TGM6O95932 706 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 RNF224P0DH78 156 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 TMIGD3P0DMS9 266 aaPredicted RBP12.8□□□□□ -0.36
NUP54-216ENST00000514901 TFPIP10646 304 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 HTR1EP28566 365 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 SHC1P29353 583 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 OPRM1P35372 400 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 ZNF136P52737 540 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 SLC25A3Q00325 362 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 SLC25A35Q3KQZ1 300 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 ULK3Q6PHR2 472 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 COMTD1Q86VU5 262 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 CCDC71Q8IV32 467 aaPredicted RBP12.8□□□□□ -0.36
NUP54-216ENST00000514901 ARHGAP24Q8N264 748 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 GPR32P1Q8NGA4 272 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 FNDC9Q8TBE3 224 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 FIG4Q92562 907 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 C3orf49Q96BT1 292 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 ZNF845Q96IR2 970 aaPredicted RBP12.8□□□□□ -0.36
NUP54-216ENST00000514901 OR5B2Q96R09 309 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 CDRT15Q96T59 188 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 POTEKPQ9BYX7 375 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 GLRX2Q9NS18 164 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 TRAPPC4Q9Y296 219 aa12.8□□□□□ -0.36
NUP54-216ENST00000514901 KDM4EB2RXH2 506 aaPredicted RBP12.79□□□□□ -0.36
NUP54-216ENST00000514901 DNPH1O43598 174 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 PMS2P2O95744 297 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 PNMTP11086 282 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 HSD17B1P14061 328 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 CRYBA2P53672 197 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 SELENOWP63302 87 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 HOXC5Q00444 222 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 OR1Q1Q15612 314 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 LRRC23Q53EV4 343 aaPredicted RBP12.79□□□□□ -0.36
NUP54-216ENST00000514901 CYBRD1Q53TN4 286 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 SWT1Q5T5J6 900 aaKnown RBP12.79□□□□□ -0.36
NUP54-216ENST00000514901 C6orf89Q6UWU4 347 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 ATG4DQ86TL0 474 aaPredicted RBP12.79□□□□□ -0.36
NUP54-216ENST00000514901 DEFB107AQ8IZN7 70 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 SLC43A2Q8N370 569 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 SLC47A1Q96FL8 570 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 SFXN3Q9BWM7 321 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 C1orf21Q9H246 121 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 COQ10BQ9H8M1 238 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 RNF122Q9H9V4 155 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 KCNJ16Q9NPI9 418 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 ADPRHL2Q9NX46 363 aa12.79□□□□□ -0.36
NUP54-216ENST00000514901 FLNBO75369 2602 aaKnown RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 A0A1B0GWA3 101 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 A0A1W2PNR3 127 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 TMEM72A0PK05 275 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 ELOA3DA6NLF2 546 aaPredicted RBP12.78□□□□□ -0.36
NUP54-216ENST00000514901 A8MVM7 634 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 SULT2B1O00204 365 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 T-ENOLP0DO92 83 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 GGT1P19440 569 aa12.78□□□□□ -0.36
NUP54-216ENST00000514901 CCNA2P20248 432 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms