RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DGKZQ13574 1117 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CEBPEQ15744 281 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 GKN2Q86XP6 184 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 OR2T27Q8NH04 317 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 OR52N1Q8NH53 320 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 NDRG1Q92597 394 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 RTP4Q96DX8 246 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CABLES2Q9BTV7 478 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 C20orf85Q9H1P6 137 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF160Q9HCG1 818 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ASH2LQ9UBL3 628 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 FAM166BA8MTA8 275 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 K7ERU9 68 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 PHOX2AO14813 284 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF207O43670 478 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 PTBP3O95758 552 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 MGMTP16455 207 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 HIST1H3AP68431 136 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 INCA1Q0VD86 236 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CAMK2BQ13554 666 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ARHGAP11BQ3KRB8 267 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 GLYR1Q49A26 553 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CXCL17Q6UXB2 119 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CDHR3Q6ZTQ4 885 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 LANCL3Q6ZV70 420 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 OR13C8Q8NGS7 320 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 GPR119Q8TDV5 335 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CDS1Q92903 461 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC12A9Q9BXP2 914 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 BCAS3Q9H6U6 928 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 G3V3Q6 166 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 SMIM6P0DI80 62 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CCR7P32248 378 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 P2RX3P56373 397 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 SERTAD2Q14140 314 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 DOC2AQ14183 400 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 TMEM183BQ1AE95 376 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 FCRLAQ7L513 359 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 OR4N2Q8NGD1 307 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CD200R1Q8TD46 325 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF566Q969W8 418 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 C11orf49Q9H6J7 331 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ADAM29Q9UKF5 820 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ACTL7AQ9Y615 435 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 TRAV20A0A0B4J274 112 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 XKRY2A2RUG3 117 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TRABD2BA6NFA1 517 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TMEM221A6NGB7 291 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 A8MUA0 341 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC31A1O15431 190 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TSPAN6O43657 245 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 PPP1R3DO95685 299 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 AGTR2P50052 363 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 RPE65Q16518 533 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 IAH1Q2TAA2 248 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 CYP27C1Q4G0S4 372 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 OR4C11Q6IEV9 310 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC35D2Q76EJ3 337 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TRAPPC6BQ86SZ2 158 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 IGDCC3Q8IVU1 814 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 UMODL1-AS1Q8N2C9 162 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 PRSS35Q8N3Z0 413 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 OR4D10Q8NGI6 311 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 RPL3LQ92901 407 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC35B4Q969S0 331 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ADIPOR1Q96A54 375 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 LYSMD1Q96S90 227 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 XYLT2Q9H1B5 865 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 STYXL1Q9Y6J8 313 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ALKQ9UM73 1620 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ST8SIA3O43173 380 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TRAPPC6AO75865 159 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 CLDN7O95471 211 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF8P17098 575 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 EPHA5P54756 1037 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 PCBD1P61457 104 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 BEX5Q5H9J7 111 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 SFXN4Q6P4A7 337 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 OR5M3Q8NGP4 307 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ANKRD30BLA7E2S9 258 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 GABARAPH6UMI1 98 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TGM5O43548 720 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 GPX3P22352 226 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 MRPL19P49406 292 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 GPR85P60893 370 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 PMPCAQ10713 525 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TSPAN31Q12999 210 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 DACT2Q5SW24 774 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 FAM182BQ5T319 152 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 NADSYN1Q6IA69 706 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 OGFOD3Q6PK18 319 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 PRSS42Q7Z5A4 293 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 FAM160A2Q8N612 972 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 GLIS1Q8NBF1 620 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ZBTB44Q8NCP5 570 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 OR5L1Q8NGL2 311 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TSLPQ969D9 159 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC6A20Q9NP91 592 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 HS3ST4Q9Y661 456 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 MYO3AQ8NEV4 1616 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms