RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 C7orf61Q8IZ16 206 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC35A4Q96G79 324 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 FCRL1Q96LA6 429 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SAMD11Q96NU1 681 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 MFFQ9GZY8 342 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SEC61A2Q9H9S3 476 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PRSS16Q9NQE7 514 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 MEMO1Q9Y316 297 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 NUPL2O15504 423 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SOD1P00441 154 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PLGP00747 810 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PVRP15151 417 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 VEGFCP49767 419 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 RAP2BP61225 183 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 FGL1Q08830 312 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 ZMYND11Q15326 602 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 GRK1Q15835 563 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 FAAH2Q6GMR7 532 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 ANKRD53Q8N9V6 530 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM41AQ96HV5 264 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 ST6GAL2Q96JF0 529 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 KLHL15Q96M94 604 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 MNTQ99583 582 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 FKBP14Q9NWM8 211 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC23A2Q9UGH3 650 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 TEX51A0A1B0GUA7 166 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 AGAP14A8MT82 685 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 NPIPB8E9PQR5 432 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SURF4O15260 269 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 TIMP1P01033 207 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 CSF1P09603 554 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 RAB40ALP0C0E4 278 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SBK2P0C263 348 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 HSD11B1P28845 292 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 NTSR1P30989 418 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 RIDAP52758 137 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 DPTQ07507 201 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC6A19Q695T7 634 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 ELP2Q6IA86 826 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC35F3Q8IY50 421 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 OR6V1Q8N148 313 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 RAB40AQ8WXH6 277 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 TRIM43Q96BQ3 446 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 TSNAXQ99598 290 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF350Q9GZX5 532 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PPA2Q9H2U2 334 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 POM121CA8CG34 1229 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PPM1DO15297 605 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 HRO43593 1189 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PRAMEF2O60811 474 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 RLN2P04090 185 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 NPR2P20594 1047 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 IRF3Q14653 427 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 GRM7Q14831 915 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF77Q15935 545 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 CDKN3Q16667 212 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 HAGHLQ6PII5 290 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 GPR155Q7Z3F1 870 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 NOX4Q9NPH5 578 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 WASH6PQ9NQA3 447 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PLEKHM1Q9Y4G2 1056 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A1B0GWA3 101 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 OR5K4A6NMS3 321 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PHYHO14832 338 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 EIF4EP06730 217 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 CD34P28906 385 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 PBX2P40425 430 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 OR10A3P58181 314 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 DUSP5Q16690 384 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 RNASE10Q5GAN6 216 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM201Q5SNT2 666 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SCGB3A2Q96PL1 93 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC6A7Q99884 636 aa7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 ISG20L2Q9H9L3 353 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 POLMQ9NP87 494 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-216ENST00000512820 MICAL3Q7RTP6 2002 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 RAB3DO95716 219 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PRKXP51817 358 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 S100A10P60903 97 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 DGCR2P98153 550 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 EIF5AL1Q6IS14 154 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC18B1Q6NT16 456 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 NIPAL3Q6P499 406 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 C20orf85Q9H1P6 137 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 SFXN1Q9H9B4 322 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PLCL2Q9UPR0 1127 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF337Q9Y3M9 751 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A1W2PPL8 197 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PRSS38A1L453 326 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 B8ZZF3 427 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 AKAIN1P0CW23 69 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 OR8G3PP0DMU2 310 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 FGF9P31371 208 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 CCR2P41597 374 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 CDK5Q00535 292 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 OC90Q02509 493 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 LTBQ06643 244 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 AIMP2Q13155 320 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 BTN1A1Q13410 526 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 HYAL4Q2M3T9 481 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms