RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CTNNBL1Q8WYA6 563 aaPredicted RBP2.25□□□□□ -2.05
VPS50-219ENST00000495039 OSTF1Q92882 214 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 TBC1D31Q96DN5 1066 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 SLC35E1Q96K37 410 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 OMDQ99983 421 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 KLHDC3Q9BQ90 382 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 SLC35A5Q9BS91 424 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 ELOVL3Q9HB03 270 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 TREM2Q9NZC2 230 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 CHRNA9Q9UGM1 479 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 PHF11Q9UIL8 331 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 NEU3Q9UQ49 428 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 CDC42BPBQ9Y5S2 1711 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 FRMPD3Q5JV73 1810 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 KIF16BQ96L93 1317 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 A0A0G2JRQ6 117 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 A0A1B0GUA9 196 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 ERVV-1B6SEH8 477 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 OR10H3O60404 316 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 N4BP1O75113 896 aaKnown RBP2.24□□□□□ -2.05
VPS50-219ENST00000495039 DESP17661 470 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 CCNE1P24864 410 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 FGF9P31371 208 aaPredicted RBP2.24□□□□□ -2.05
VPS50-219ENST00000495039 CA8P35219 290 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 LEPP41159 167 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 ACAA2P42765 397 aaKnown RBP2.24□□□□□ -2.05
VPS50-219ENST00000495039 DAP3P51398 398 aaKnown RBP2.24□□□□□ -2.05
VPS50-219ENST00000495039 BIDP55957 195 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 MPPED2Q15777 294 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 TP53I3Q53FA7 332 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 C1orf146Q5VVC0 180 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 RNF165Q6ZSG1 346 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 GDPD3Q7L5L3 318 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 MOB3BQ86TA1 216 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 ZDHHC21Q8IVQ6 265 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 SLC38A6Q8IZM9 456 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 C20orf203Q8NBC4 194 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 OR56B4Q8NH76 319 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 FBXO30Q8TB52 745 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 ST8SIA1Q92185 356 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 FAM3CQ92520 227 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 THRSPQ92748 146 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 UCN3Q969E3 161 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 STARD4Q96DR4 205 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 NRTNQ99748 197 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 TUBGCP2Q9BSJ2 902 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 EDEM2Q9BV94 578 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 POLR1EQ9GZS1 481 aaKnown RBP2.24□□□□□ -2.05
VPS50-219ENST00000495039 SLC17A5Q9NRA2 495 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 AIG1Q9NVV5 245 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 AATFQ9NY61 560 aaKnown RBP eCLIP2.24□□□□□ -2.05
VPS50-219ENST00000495039 SLCO1B1Q9Y6L6 691 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 AP1M2Q9Y6Q5 423 aa2.24□□□□□ -2.05
VPS50-219ENST00000495039 A0A1B0GUS0 222 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 A0A1W2PQ67 120 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 PSMB11A5LHX3 300 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 VSTM2BA6NLU5 285 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 CXCL13O43927 109 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 TBX19O60806 448 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 ZNF780AO75290 641 aaPredicted RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 P04436 131 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 KRT8P05787 483 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 PTMAP06454 111 aaKnown RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 HSPA5P11021 654 aaKnown RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 UQCRC2P22695 453 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 SOX6P35712 828 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 TDO2P48775 406 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 PRPS1P60891 318 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 LRRC63Q05C16 580 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 DAZ2Q13117 558 aaKnown RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 SNTB2Q13425 540 aaKnown RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 MESDQ14696 234 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 PDK4Q16654 411 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 NADK2Q4G0N4 442 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 DNAJC21Q5F1R6 531 aaKnown RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 KLF17Q5JT82 389 aaPredicted RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 PAGE3Q5JUK9 113 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 PYHIN1Q6K0P9 492 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 CLEC4FQ8N1N0 589 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 ZNF561Q8N587 486 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 SYT14Q8NB59 555 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 SUMF2Q8NBJ7 301 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 NEIL3Q8TAT5 605 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 SYAP1Q96A49 352 aaPredicted RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 DTNBP1Q96EV8 351 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 AMDHD1Q96NU7 426 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 CCNL2Q96S94 520 aaPredicted RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 HIST1H4GQ99525 98 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 ZNF670Q9BS34 389 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 NIPSNAP3BQ9BS92 247 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 ALG12Q9BV10 488 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 SELENOIQ9C0D9 397 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 VCPKMTQ9H867 229 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 SLC25A22Q9H936 323 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 PLGRKTQ9HBL7 147 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 DAZ3Q9NR90 486 aaKnown RBP2.23□□□□□ -2.05
VPS50-219ENST00000495039 SIGLEC8Q9NYZ4 499 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 KIF25Q9UIL4 384 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 RAB26Q9ULW5 256 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 PRPF19Q9UMS4 504 aaKnown RBP2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms