RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 PRAMEF20Q5VT98 475 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 PRAMEF8Q5VWM4 474 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 PRAMEF7Q5VXH5 474 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 HEPHL1Q6MZM0 1159 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 EIF3MQ7L2H7 374 aaKnown RBP7.89□□□□□ -1.15
USP4-213ENST00000488520 PATL1Q86TB9 770 aaKnown RBP7.89□□□□□ -1.15
USP4-213ENST00000488520 MARCH3Q86UD3 253 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 MSRB3Q8IXL7 192 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 ULK2Q8IYT8 1036 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 PGAM4Q8N0Y7 254 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 ARHGAP24Q8N264 748 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 FBXW8Q8N3Y1 598 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 ANKFN1Q8N957 763 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 BHLHE22Q8NFJ8 381 aaPredicted RBP7.89□□□□□ -1.15
USP4-213ENST00000488520 OR2T12Q8NG77 320 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 OR4K17Q8NGC6 315 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 NFKBIDQ8NI38 313 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 DUSP19Q8WTR2 217 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 SLC38A5Q8WUX1 472 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 RASSF5Q8WWW0 418 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 OIT3Q8WWZ8 545 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 RNASE6Q93091 150 aaKnown RBP7.89□□□□□ -1.15
USP4-213ENST00000488520 HGDQ93099 445 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 MCUR1Q96AQ8 359 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 LRRC46Q96FV0 321 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 TMEM19Q96HH6 336 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 NODALQ96S42 347 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 KCTD14Q9BQ13 255 aaPredicted RBP7.89□□□□□ -1.15
USP4-213ENST00000488520 CPPED1Q9BRF8 314 aaPredicted RBP7.89□□□□□ -1.15
USP4-213ENST00000488520 SLC39A3Q9BRY0 314 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 OSBPL11Q9BXB4 747 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 KRTAP4-8Q9BYQ9 185 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 C1orf21Q9H246 121 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 DTNAQ9Y4J8 743 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 COL6A5A8TX70 2615 aa7.89□□□□□ -1.15
USP4-213ENST00000488520 YLPM1P49750 1951 aaKnown RBP7.88□□□□□ -1.15
USP4-213ENST00000488520 HIVEP2P31629 2446 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 TRBV5-3A0A0A0MS03 114 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 SMAD7O15105 426 aaKnown RBP7.88□□□□□ -1.15
USP4-213ENST00000488520 FADS1O60427 444 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 HCN1O60741 890 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 TRAPPC6AO75865 159 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 PGM3O95394 542 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 OXSR1O95747 527 aaPredicted RBP7.88□□□□□ -1.15
USP4-213ENST00000488520 ANGPTL1O95841 491 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 IGKV1D-16P01601 117 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 HEXAP06865 529 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 UQCRBP14927 111 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 ETS2P15036 469 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 PEX19P40855 299 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 VEZF1Q14119 521 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 SELPLGQ14242 412 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 DAZAP2Q15038 168 aaPredicted RBP7.88□□□□□ -1.15
USP4-213ENST00000488520 HYAL4Q2M3T9 481 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 VMACQ2NL98 169 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 SPATS1Q496A3 300 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 LIN52Q52LA3 116 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 TMEM81Q6P7N7 255 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 RINLQ6ZS11 566 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 KRTAP1-3Q8IUG1 177 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 SLC15A3Q8IY34 581 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 MICU2Q8IYU8 434 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 CIARTQ8N365 385 aaPredicted RBP7.88□□□□□ -1.15
USP4-213ENST00000488520 OR4C3Q8NH37 302 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 OR52P1PQ8NH57 321 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 WDR60Q8WVS4 1066 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 LZICQ8WZA0 190 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 MAL2Q969L2 176 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 ARSGQ96EG1 525 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 REXO5Q96IC2 774 aaKnown RBP7.88□□□□□ -1.15
USP4-213ENST00000488520 ZNF597Q96LX8 424 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 BTBD10Q9BSF8 475 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 ZNF350Q9GZX5 532 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 SERHL2Q9H4I8 314 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 PLEKHF2Q9H8W4 249 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 FBXO34Q9NWN3 711 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 CMTM6Q9NX76 183 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 SLC35A3Q9Y2D2 325 aa7.88□□□□□ -1.15
USP4-213ENST00000488520 CHCHD2Q9Y6H1 151 aaPredicted RBP7.88□□□□□ -1.15
USP4-213ENST00000488520 NPIPA5A0A0B4J1W7 369 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 A0A1W2PQD3 144 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 SERINC4A6NH21 518 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 CLCA1A8K7I4 914 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 FAM220BPB1ANY3 271 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 EEF1E1-BLOC1S5C9J1V9 151 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 ALG1L2C9J202 215 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 NPIPA7E9PJI5 369 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 M0QX08 132 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 ZNF264O43296 627 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 EEF1E1O43324 174 aaKnown RBP7.87□□□□□ -1.15
USP4-213ENST00000488520 HCRTR2O43614 444 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 EIF4E2O60573 245 aaKnown RBP7.87□□□□□ -1.15
USP4-213ENST00000488520 UGT2B17O75795 530 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 CSTAP01040 98 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 NGFRP08138 427 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 NPIPA8P0DM63 369 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 HOXB9P17482 250 aaPredicted RBP7.87□□□□□ -1.15
USP4-213ENST00000488520 CD53P19397 219 aa7.87□□□□□ -1.15
USP4-213ENST00000488520 TCN1P20061 433 aaPredicted RBP7.87□□□□□ -1.15
USP4-213ENST00000488520 GDF1P27539 372 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms