RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 CHCHD2Q9Y6H1 151 aaPredicted RBP3.57□□□□□ -1.84
SNRNP40-205ENST00000486941 TEX264Q9Y6I9 313 aa3.57□□□□□ -1.84
SNRNP40-205ENST00000486941 FBN3Q75N90 2809 aa3.57□□□□□ -1.84
SNRNP40-205ENST00000486941 ZANQ9Y493 2812 aa3.57□□□□□ -1.84
SNRNP40-205ENST00000486941 SONP18583 2426 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ABCA1O95477 2261 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 USF3Q68DE3 2245 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 PRR14LQ5THK1 2151 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SAA2-SAA4A0A096LPE2 208 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 C15orf38-AP3S2A0A0A6YYH1 394 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 NCF1BA6NI72 391 aaPredicted RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 OR6C76A6NM76 312 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 NCF1CA8MVU1 366 aaPredicted RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 KDM4EB2RXH2 506 aaPredicted RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 RTCAO00442 366 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 TIMM23O14925 209 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ARHGEF9O43307 516 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CDH16O75309 829 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SERPINI2O75830 405 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 TRAPPC6AO75865 159 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ACSL3O95573 720 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 GPR75O95800 540 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 HLA-DQA2P01906 255 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 HPNP05981 417 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SLC35E2BP0CK96 405 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SLC35E2P0CK97 266 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CCDC166P0CW27 439 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 NCF1P14598 390 aaPredicted RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CD1DP15813 335 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 EPORP19235 508 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CD53P19397 219 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CD22P20273 847 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 GDF1P27539 372 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 C21orf33P30042 268 aaPredicted RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 MSH2P43246 934 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SSR2P43308 183 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 TRPC1P48995 793 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CDK9P50750 372 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ZNF136P52737 540 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ARL4CP56559 192 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ATP6V0D1P61421 351 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 DCAF7P61962 342 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 HERVK_113P63132 956 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ERVK-8P63133 956 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 EEF1A1P68104 462 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 RPP38P78345 283 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 PLIN5Q00G26 463 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 TNFRSF17Q02223 184 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SLAMF1Q13291 335 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 EBPQ15125 230 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 RPS6KA2Q15349 733 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 PDK4Q16654 411 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 EEF1A1P5Q5VTE0 462 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 KHDRBS2Q5VWX1 349 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 C18orf63Q68DL7 685 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 OR4C11Q6IEV9 310 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 MED27Q6P2C8 311 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 DGAT2L6Q6ZPD8 337 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 C9orf139Q6ZV77 190 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CYS1Q717R9 158 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 LRRC70Q7Z2Q7 622 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 GPR180Q86V85 440 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 LRRC8AQ8IWT6 810 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 OR4N5Q8IXE1 308 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 TAGAPQ8N103 731 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CIARTQ8N365 385 aaPredicted RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ZCCHC7Q8N3Z6 543 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ZNF441Q8N8Z8 693 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SNX31Q8N9S9 440 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 OR7G3Q8NG95 312 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 OR10G3Q8NGC4 313 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 LINC01560Q8TB33 94 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 STAG3L4Q8TBR4 150 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SPPL2AQ8TCT8 520 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ZPLD1Q8TCW7 415 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SMPDL3BQ92485 455 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 RIT1Q92963 219 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 MUL1Q969V5 352 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ESAMQ96AP7 390 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 PPWD1Q96BP3 646 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 NTNG2Q96CW9 530 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CMTM7Q96FZ5 175 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 UBXN10Q96LJ8 280 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ZNF597Q96LX8 424 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 JSRP1Q96MG2 331 aaPredicted RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ZFP3Q96NJ6 502 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 SMR3AQ99954 134 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CENPKQ9BS16 269 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 C1QTNF5Q9BXJ0 243 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ERVK-6Q9BXR3 956 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 ANGPTL4Q9BY76 406 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 TRIM31Q9BZY9 425 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 WWTR1Q9GZV5 400 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 DDX47Q9H0S4 455 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 UBQLN3Q9H347 655 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 TRMT1Q9NXH9 659 aaKnown RBP3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 PSD3Q9NYI0 1048 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 CD274Q9NZQ7 290 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 UPB1Q9UBR1 384 aa3.56□□□□□ -1.84
SNRNP40-205ENST00000486941 PHF11Q9UIL8 331 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms