RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 RAP1BP61224 184 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 RIPPLY1Q0D2K3 151 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 ABCA11PQ4W5N1 156 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 GPRC6AQ5T6X5 926 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 KPRPQ5T749 579 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 PRSS41Q7RTY9 318 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 C6orf120Q7Z4R8 191 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 TTC5Q8N0Z6 440 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 C15orf54Q8N8G6 183 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 FAM71CQ8NEG0 241 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 OR51S1Q8NGJ8 323 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 BRSK1Q8TDC3 778 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 HPDLQ96IR7 371 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 CCDC43Q96MW1 224 aaKnown RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 ZNF641Q96N77 438 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 TSNARE1Q96NA8 513 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 ZNF2Q9BSG1 426 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 KRTAP4-1Q9BYQ7 146 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 ALDH8A1Q9H2A2 487 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 CDC42EP4Q9H3Q1 356 aaKnown RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 PLGRKTQ9HBL7 147 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 SMPD3Q9NY59 655 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 SLC25A37Q9NYZ2 338 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 SPASTQ9UBP0 616 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 MAD1L1Q9Y6D9 718 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 NUP214P35658 2090 aaPredicted RBP1.57□□□□□ -2.16
VPS50-216ENST00000484954 PPIAL4EA0A075B759 164 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 PPIAL4CA0A0B4J2A2 164 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 A0A0U1RQS6 177 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 A0A0U1RQV5 110 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 PPIAL4DF5H284 164 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 PRKYO43930 277 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 SPAG7O75391 227 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 PPIAL4FP0DN26 164 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 FUT1P19526 365 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 LEPP41159 167 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 NMUP48645 174 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 PRKXP51817 358 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 ACTA2P62736 377 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 ACTC1P68032 377 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 NSUN5P1Q3KNT7 163 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 KRTAP13-2Q52LG2 175 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 SLC10A5Q5PT55 438 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 GDPD3Q7L5L3 318 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 CBWD2Q8IUF1 395 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 ELMOD2Q8IZ81 293 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 OR5L2Q8NGL0 311 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 SLC13A3Q8WWT9 602 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 RPL3LQ92901 407 aaKnown RBP1.57□□□□□ -2.16
VPS50-216ENST00000484954 POLD4Q9HCU8 107 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 CCL28Q9NRJ3 127 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 RDH8Q9NYR8 311 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 UBE4BO95155 1302 aa1.57□□□□□ -2.16
VPS50-216ENST00000484954 TET2Q6N021 2002 aaPredicted RBP1.57□□□□□ -2.16
VPS50-216ENST00000484954 A0A0G2JN53 185 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 A0A1B0GUL7 405 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 IDSB3KWA1 339 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 N4BP1O75113 896 aaKnown RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 MT-ATP6P00846 226 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 CELP19835 753 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 CALB2P22676 271 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 CXCR2P25025 360 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 PTGFRP43088 359 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 HSPA2P54652 639 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 CSTF1Q05048 431 aaKnown RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 REG3AQ06141 175 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 AP1B1Q10567 949 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 ARL6IP1Q15041 203 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 PDK1Q15118 436 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 SF3A2Q15428 464 aaKnown RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 TRIP10Q15642 601 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 C5orf47Q569G3 176 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 LY6G6FQ5SQ64 297 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 ATL3Q6DD88 541 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 CCDC137Q6PK04 289 aaKnown RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 C16orf62Q7Z3J2 963 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 TMEM17Q86X19 198 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 KIR3DL3Q8N743 410 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 BCORP1Q8N888 145 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 OR9G1Q8NH87 305 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 UBALD1Q8TB05 177 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 GIPC3Q8TF64 312 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 RAPGEF5Q92565 580 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 FRZBQ92765 325 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 ZNF670Q9BS34 389 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 NAT10Q9H0A0 1025 aaKnown RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 C20orf85Q9H1P6 137 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 THAP9Q9H5L6 903 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 ZNF385DQ9H6B1 395 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 DHX33Q9H6R0 707 aaKnown RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 SOHLH2Q9NX45 425 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 YTHDF2Q9Y5A9 579 aaKnown RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 V9GY05 133 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 SPACA6W5XKT8 324 aa1.56□□□□□ -2.16
VPS50-216ENST00000484954 COL5A1P20908 1838 aaPredicted RBP1.56□□□□□ -2.16
VPS50-216ENST00000484954 BRWD3Q6RI45 1802 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 IGHV2-70DA0A0C4DH43 119 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 FAM230AA0A1W2PPH8 454 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 FAM170AA1A519 330 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 CD5LO43866 347 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms