RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 THBDP07204 575 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 LINGO3P0C6S8 592 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 NPIPA8P0DM63 369 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 POU2F1P14859 743 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 LBPP18428 481 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ATF4P18848 351 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 MATN1P21941 496 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 DNASE1P24855 282 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 PSMA4P25789 261 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ELK4P28324 431 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CD79BP40259 229 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC6A8P48029 635 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 KCNJ5P48544 419 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 P2RX1P51575 399 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CLNS1AP54105 237 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CTBP2P56545 445 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF117Q03924 483 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 FAM27E3Q08E93 113 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 FOXF1Q12946 379 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 GUSBP1Q15486 140 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CTU2Q2VPK5 515 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ANXA8L1Q5VT79 327 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 HHATQ5VTY9 493 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 HBMQ6B0K9 141 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 GTF2IRD2BQ6EKJ0 949 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 OR4F3Q6IEY1 312 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 PAMR1Q6UXH9 720 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 GTF2IRD2Q86UP8 949 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CLECL1Q8IZS7 167 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 KLHL36Q8N4N3 616 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 TMCO5AQ8N6Q1 288 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF614Q8N883 585 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ANKRD42Q8N9B4 389 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CHDHQ8NE62 594 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 TOR1AIP2Q8NFQ8 470 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 OR5D16Q8NGK9 328 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 OR6K3Q8NGY3 331 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 OR2V1Q8NHB1 315 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 TESCQ96BS2 214 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 RCC1LQ96I51 464 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 GMPPAQ96IJ6 420 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ADGRG7Q96K78 797 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC35G5Q96KT7 338 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 SDF2Q99470 211 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 NPAS1Q99742 590 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 NUF2Q9BZD4 464 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 NMUR2Q9GZQ4 415 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 OPN3Q9H1Y3 402 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CXXC4Q9H2H0 198 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 LIME1Q9H400 295 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 TMEM185BQ9H7F4 350 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 MEAF6Q9HAF1 191 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 TIGARQ9NQ88 270 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 GLRX2Q9NS18 164 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CCM2LQ9NUG4 571 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 EXD2Q9NVH0 621 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF226Q9NYT6 803 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ICAM5Q9UMF0 924 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 PROCRQ9UNN8 238 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 CARD8Q9Y2G2 431 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 PLEKHA6Q9Y2H5 1048 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 KCNE3Q9Y6H6 103 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 FREM1Q5H8C1 2179 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 A0A0J9YW62 118 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 PRSS51A0A1B0GVH4 220 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 TMEM120BA0PK00 339 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 TRPC5OSA6NMA1 111 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 C22orf46C9J442 243 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 E9PBE3 544 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 NPIPB9F8W1W9 429 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 C16orf97H3BN30 126 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF264O43296 627 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 CXCL13O43927 109 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 EIF4E2O60573 245 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 SS18L1O75177 396 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ERLIN1O75477 346 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 CGAP01215 116 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 OPN1LWP04000 364 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 HRGP04196 525 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 UBL4AP11441 157 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 IL11P20809 199 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 UQCRC2P22695 453 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 SFTPDP35247 375 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 UGT2B10P36537 528 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 CARD18P57730 90 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 BST1Q10588 318 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 CBFBQ13951 182 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 KEAP1Q14145 624 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 GPR68Q15743 365 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF141Q15928 474 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ARHGAP11BQ3KRB8 267 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 SPANXN4Q5MJ08 99 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 PDZK1Q5T2W1 519 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ATAD3BQ5T9A4 648 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ATG16L1Q676U5 607 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF474Q6S9Z5 364 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 CBLN3Q6UW01 205 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 C16orf62Q7Z3J2 963 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 C6orf120Q7Z4R8 191 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms