RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 IL6P05231 212 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 ZCCHC18P0CG32 403 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 EPGNQ6UW88 154 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 Q6ZT83 130 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 LRRC75A-AS1Q8N1F1 130 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 ARFGAP2Q8N6H7 521 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 TRIML2Q8N7C3 387 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 STEAP2Q8NFT2 490 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 SLC25A43Q8WUT9 341 aaPredicted RBP12.48□□□□□ -0.41
UPF3A-204ENST00000475218 ZBTB18Q99592 522 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 CCL19Q99731 98 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 SERINC1Q9NRX5 453 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 ZIM2Q9NZV7 527 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 CADP27708 2225 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 ZC3H12DA2A288 527 aaKnown RBP12.48□□□□□ -0.41
UPF3A-204ENST00000475218 SULT2B1O00204 365 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 TFPTP0C1Z6 253 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 COX5AP20674 150 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 FPR1P21462 350 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 H3F3AP84243 136 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 LRRC74AQ0VAA2 488 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 GSTA3Q16772 222 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 Q5PR19 223 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 MRPL2Q5T653 305 aaKnown RBP12.48□□□□□ -0.41
UPF3A-204ENST00000475218 C20orf204Q6ZNR8 217 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 MTDHQ86UE4 582 aaKnown RBP12.48□□□□□ -0.41
UPF3A-204ENST00000475218 VRK2Q86Y07 508 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 CCDC103Q8IW40 242 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 CMIPQ8IY22 773 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF563Q8TA94 476 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 PIGTQ969N2 578 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 TACO1Q9BSH4 297 aaKnown RBP12.48□□□□□ -0.41
UPF3A-204ENST00000475218 HDHD5Q9BXW7 423 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 MTHFD2LQ9H903 347 aaPredicted RBP12.48□□□□□ -0.41
UPF3A-204ENST00000475218 SLCO1B3Q9NPD5 702 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 OSGIN1Q9UJX0 560 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 USH1CQ9Y6N9 552 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 USF3Q68DE3 2245 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 TMEM72A0PK05 275 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 CDHR4A6H8M9 788 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 FAAHO00519 579 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 SMPD2O60906 423 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 LYZL6O75951 148 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 PMS2P2O95744 297 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 NR2F1P10589 423 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 TFPIP10646 304 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 IMPDH2P12268 514 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 CCNA2P20248 432 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 IGHV1-2P23083 117 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 ACAA2P42765 397 aaKnown RBP12.47□□□□□ -0.41
UPF3A-204ENST00000475218 TXNL4AP83876 142 aaKnown RBP12.47□□□□□ -0.41
UPF3A-204ENST00000475218 HPCAP84074 193 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 EPS8Q12929 822 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 ITGADQ13349 1161 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 P2RY6Q15077 328 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 TTMPQ5BVD1 217 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 AGBL2Q5U5Z8 902 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 SHEQ5VZ18 495 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 SLC38A5Q8WUX1 472 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 WDR60Q8WVS4 1066 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 GTF2H4Q92759 462 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 NEUROG1Q92886 237 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 KISS1RQ969F8 398 aaPredicted RBP12.47□□□□□ -0.41
UPF3A-204ENST00000475218 ADAM19Q9H013 955 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 PAIP1Q9H074 479 aaKnown RBP12.47□□□□□ -0.41
UPF3A-204ENST00000475218 TPT1P8Q9HAU6 139 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 SLC52A3Q9NQ40 469 aa12.47□□□□□ -0.41
UPF3A-204ENST00000475218 NAV3Q8IVL0 2385 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 TMED7-TICAM2A0A0A6YYA0 188 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 HS3ST1O14792 307 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 UBDO15205 165 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 ERLIN1O75477 346 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 NUDT7P0C024 238 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 PRG2P13727 222 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 POLR2JP52435 117 aaKnown RBP12.46□□□□□ -0.41
UPF3A-204ENST00000475218 SLC16A1P53985 500 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 NR1H2P55055 460 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 FOXG1P55316 489 aaPredicted RBP12.46□□□□□ -0.41
UPF3A-204ENST00000475218 CSNK2A1P68400 391 aaPredicted RBP12.46□□□□□ -0.41
UPF3A-204ENST00000475218 PDK3Q15120 406 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 RPS26P11Q5JNZ5 115 aaPredicted RBP12.46□□□□□ -0.41
UPF3A-204ENST00000475218 NCMAPQ5T1S8 102 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 ALKBH2Q6NS38 261 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 SLC2A7Q6PXP3 512 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF836Q6ZNA1 936 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 MSANTD1Q6ZTZ1 278 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 BHLHA15Q7RTS1 189 aaPredicted RBP12.46□□□□□ -0.41
UPF3A-204ENST00000475218 FUNDC1Q8IVP5 155 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 MSRB3Q8IXL7 192 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 C10orf111Q8N326 155 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 PERPQ96FX8 193 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 C18orf12Q96KH6 178 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 EBF4Q9BQW3 602 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 TMED7Q9Y3B3 224 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 HDGFL3Q9Y3E1 203 aa12.46□□□□□ -0.41
UPF3A-204ENST00000475218 DPRXA6NFQ7 191 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 KRT75O95678 551 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 DBIP07108 87 aaKnown RBP12.46□□□□□ -0.42
UPF3A-204ENST00000475218 GKN3PP0CG01 181 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 IL32P24001 234 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms