RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 RNH1P13489 461 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF44P15621 663 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF17P17021 662 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PSMB1P20618 241 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PCMT1P22061 227 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 CALRP27797 417 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 AQP1P29972 269 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 TDO2P48775 406 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SLC26A2P50443 739 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 ACTR1AP61163 376 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 CKAP4Q07065 602 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 EGFEM1PQ0D2K5 195 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SLC10A7Q0GE19 358 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 GPM6BQ13491 265 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 C1orf61Q13536 156 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 ELAVL3Q14576 367 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 MESDQ14696 234 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 TRIM16LQ309B1 348 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 CFAP221Q4G0U5 840 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 TPGS2Q68CL5 300 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF544Q6NX49 715 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 RGS9BPQ6ZS82 235 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 HSD17B13Q7Z5P4 300 aaPredicted RBP2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PPP1R27Q86WC6 154 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SKA3Q8IX90 412 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SVOPLQ8N434 492 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 OR56B4Q8NH76 319 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 TCTEX1D2Q8WW35 142 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 NEIL2Q969S2 332 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 FAM104AQ969W3 186 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 ELSPBP1Q96BH3 223 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 KLHDC3Q9BQ90 382 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SLC35A5Q9BS91 424 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 TUBGCP2Q9BSJ2 902 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 CNPY3Q9BT09 278 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 VCX2Q9H322 139 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF385DQ9H6B1 395 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SMYD3Q9H7B4 428 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PTGES2Q9H7Z7 377 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 APMAPQ9HDC9 416 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PLSCR3Q9NRY6 295 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 UFSP2Q9NUQ7 469 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 SMOXQ9NWM0 555 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 PHF11Q9UIL8 331 aa2.02□□□□□ -2.09
CCDC88A-212ENST00000474059 IGHV7-81A0A0B4J1V7 117 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 PINLYPA6NC86 204 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 PANO1I0J062 215 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF264O43296 627 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CXCL13O43927 109 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 OR10H3O60404 316 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 ECI2O75521 394 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 TIMP1P01033 207 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 IGLV1-47P01700 117 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 IGHV3-48P01763 117 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 IMPDH1P20839 514 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 NTSP30990 170 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 FGF9P31371 208 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 LEPP41159 167 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 DAP3P51398 398 aaKnown RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 RPS14P62263 151 aaKnown RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF45Q02386 682 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CHRNB3Q05901 458 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CCDC173Q0VFZ6 552 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 IL24Q13007 206 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CHIT1Q13231 466 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 GANABQ14697 944 aaKnown RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 KYAT1Q16773 422 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF658BQ4V348 819 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 LRRC23Q53EV4 343 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 BEND3Q5T5X7 828 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 ZSCAN25Q6NSZ9 544 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 WDR74Q6RFH5 385 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CASC1Q6TDU7 716 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 UNQ9370/PRO34162Q6UXP9 181 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CCDC80Q76M96 950 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 TMEM179BQ7Z7N9 219 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF589Q86UQ0 364 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 NRMQ8IXM6 262 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 OR2L13Q8N349 312 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 C14orf178Q8N769 122 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 FBXO30Q8TB52 745 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 C16orf74Q96GX8 76 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 PGLYRP4Q96LB8 373 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 IMMP1LQ96LU5 166 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 PSKH2Q96QS6 385 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 TBX15Q96SF7 602 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 RTBDNQ9BSG5 229 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 NT5C3AQ9H0P0 336 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 LRRN3Q9H3W5 708 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 POPDC2Q9HBU9 364 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 NUDT15Q9NV35 164 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CLEC4AQ9UMR7 237 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 POLDIP2Q9Y2S7 368 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 TIMM10BQ9Y5J6 103 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 SLCO1B1Q9Y6L6 691 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 THSD7BQ9C0I4 1608 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 CHD4Q14839 1912 aa2.01□□□□□ -2.09
CCDC88A-212ENST00000474059 TRAV26-1A0A087WT03 109 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 A0A0G2JRQ6 117 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 A0A1B0GUS0 222 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms