RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 FAM199XQ6PEV8 388 aaPredicted RBP12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 CCDC71Q8IV32 467 aaPredicted RBP12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 SULF2Q8IWU5 870 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 OR1J4Q8NGS1 313 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 OR11L1Q8NGX0 322 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TRAPPC13A5PLN9 417 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 NCBP2LA6PVI3 153 aaKnown RBP12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 IGHV3-9P01782 118 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 CTRB1P17538 263 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 BMXP51813 675 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 MAT1AQ00266 395 aaKnown RBP12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 OPCMLQ14982 345 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 CTRB2Q6GPI1 263 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 DESI1Q6ICB0 168 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 MMP21Q8N119 569 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 ACVR1CQ8NER5 493 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 HLA-CQ95604 372 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 RHBDF1Q96CC6 855 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 ZNF778Q96MU6 729 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TUBA1CQ9BQE3 449 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 HHATLQ9HCP6 504 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 SIX2Q9NPC8 291 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 ZDHHC7Q9NXF8 308 aa12.43□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 FAM183AA6NL82 134 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 EPOP01588 193 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TACR3P29371 465 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PRDX3P30048 256 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 SNCAP37840 140 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 IL13RA1P78552 427 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 INCA1Q0VD86 236 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PAPD5Q8NDF8 572 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PAQR8Q8TEZ7 354 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 IMP4Q96G21 291 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 LMF2Q9BU23 707 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 HOXD1Q9GZZ0 328 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 RAB3DO95716 219 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 GRPP07492 148 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 F3P13726 295 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 MRPS34P82930 218 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 COX15Q7KZN9 410 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 C1orf74Q96LT6 269 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 INIPQ9NRY2 104 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 ZFP57Q9NU63 452 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TIMP1P01033 207 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 LAMP1P11279 417 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 IL7P13232 177 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 CD1DP15813 335 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 DBX2Q6ZNG2 339 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 OR2M7Q8NG81 312 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 OR5W2Q8NH69 310 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 INTS12Q96CB8 462 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 LGALS12Q96DT0 336 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TM7SF3Q9NS93 570 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 AQP7O14520 342 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 VEGFBP49765 207 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PRPS1P60891 318 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PLAURQ03405 335 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 CPOQ8IVL8 374 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 CDS1Q92903 461 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 MICU1Q9BPX6 476 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 SIX4Q9UIU6 781 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TRIP12Q14669 1992 aaPredicted RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 ARPC4-TTLL3A0A0A6YYG9 625 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 IL4RP24394 825 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 AKR1C1Q04828 323 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TMEM176BQ3YBM2 270 aaPredicted RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 BHLHE23Q8NDY6 225 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 UHRF2Q96PU4 802 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 NMES1Q9C002 83 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 RIMS3Q9UJD0 308 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PRAMEF27A3QJZ7 478 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PHYHO14832 338 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TXNL1O43396 289 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 SLC16A7O60669 478 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 F13BP05160 661 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 ERP29P30040 261 aaKnown RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PTTG1IPP53801 180 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 POU3F1Q03052 451 aaPredicted RBP12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 FAM74A1Q5RGS3 127 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PRAMEF9Q5VWM5 478 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 SLC16A14Q7RTX9 510 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TCTE3Q8IZS6 198 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 FAM185AQ8N0U4 392 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 FGGYQ96C11 551 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PIKFYVEQ9Y2I7 2098 aa12.42□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 LOC102724200A0A096LPH7 203 aaPredicted RBP12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 HADHBP55084 474 aaKnown RBP12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 RAB11AP62491 216 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 FLI1Q01543 452 aaPredicted RBP12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 SYNPRQ8TBG9 265 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 UTP23Q9BRU9 249 aaKnown RBP12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 DUSP22Q9NRW4 184 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 TAS2R8Q9NYW2 309 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 FETUBQ9UGM5 382 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 PTHP01270 115 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 CD38P28907 300 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 EVI2BP34910 448 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 KIAA1958Q8N8K9 716 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 MS4A4EQ96PG1 132 aa12.41□□□□□ -0.42
NPHP3-ACAD11-201ENST00000471702 BIN3Q9NQY0 253 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms