RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PLAURQ03405 335 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 CBFBQ13951 182 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 KRT72Q14CN4 511 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 LARS2Q15031 903 aaKnown RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 BCL2A1Q16548 175 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 PLPPR5Q32ZL2 321 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 GLYR1Q49A26 553 aaPredicted RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 LIN52Q52LA3 116 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 DCST1Q5T197 706 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 RNF220Q5VTB9 566 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 RAET1LQ5VY80 246 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 AAGABQ6PD74 315 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF836Q6ZNA1 936 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 CALHM3Q86XJ0 350 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 VRK2Q86Y07 508 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 SLC30A8Q8IWU4 369 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 OR52P1PQ8NH57 321 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 OR5W2Q8NH69 310 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 ZBTB8AQ96BR9 441 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 PERPQ96FX8 193 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 REXO5Q96IC2 774 aaKnown RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 SFXN2Q96NB2 322 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 ZFP3Q96NJ6 502 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 UCN2Q96RP3 112 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 TRIB1Q96RU8 372 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 KLHDC3Q9BQ90 382 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 EXOSC3Q9NQT5 275 aaKnown RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 MED17Q9NVC6 651 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF232Q9UNY5 417 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 VDAC3Q9Y277 283 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF443Q9Y2A4 671 aaPredicted RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 IFT52Q9Y366 437 aa10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 GPC6Q9Y625 555 aaPredicted RBP10.69□□□□□ -0.7
SQSTM1-206ENST00000466342 CR1P17927 2039 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ABCA1O95477 2261 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 MED12Q93074 2177 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 C7orf72A4D263 438 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 CDHR4A6H8M9 788 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 FAM220BPB1ANY3 271 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 KDM4EB2RXH2 506 aaPredicted RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 DNAJA2O60884 412 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 NUDT14O95848 222 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 IL18BPO95998 194 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 LINGO3P0C6S8 592 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 PABPC4LP0CB38 370 aaKnown RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF17P17021 662 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 TCEA1P23193 301 aaKnown RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 CTSSP25774 331 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 OPRM1P35372 400 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 CCR4P51679 360 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF136P52737 540 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 PCBP3P57721 371 aaKnown RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 EEF1A1P68104 462 aaKnown RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 DMTNQ08495 405 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ZSWIM7Q19AV6 140 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 VMACQ2NL98 169 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 TMEM44Q2T9K0 475 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF311Q5JNZ3 666 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 MRPL2Q5T653 305 aaKnown RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ERICH5Q6P6B1 374 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ADGRE4PQ86SQ3 457 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 KRT73Q86Y46 540 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 GRAMD2AQ8IUY3 354 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 SLC15A3Q8IY34 581 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 GPR119Q8TDV5 335 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 CNOT9Q92600 299 aaKnown RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF583Q96ND8 569 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 DACH2Q96NX9 599 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 TM9SF2Q99805 663 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 PIGQQ9BRB3 760 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 SPATA5L1Q9BVQ7 753 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 PIF1Q9H611 641 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 ARMC7Q9H6L4 198 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 CMTM6Q9NX76 183 aa10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 RAI1Q7Z5J4 1906 aaPredicted RBP10.68□□□□□ -0.7
SQSTM1-206ENST00000466342 OR2M5A3KFT3 312 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 CCT8L1PA6NM43 557 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 LINC01387J3KSC0 135 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 NME4O00746 187 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 CASKO14936 926 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 SERPINB7O75635 380 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 RCBTB2O95199 551 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 PGCP20142 388 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 FPR1P21462 350 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 AQP1P29972 269 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 PRKAR1BP31321 381 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 SLC6A8P48029 635 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 LHX2P50458 406 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 SLC7A2P52569 658 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 PSME3P61289 254 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 QPRTQ15274 297 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 TOMM34Q15785 309 aaPredicted RBP10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 INTS11Q5TA45 600 aaKnown RBP10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 EEF1A1P5Q5VTE0 462 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF440Q8IYI8 595 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 GTPBP8Q8N3Z3 284 aaPredicted RBP10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 OR2T12Q8NG77 320 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 OR5M1Q8NGP8 315 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 WNT2BQ93097 391 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF607Q96SK3 696 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms