RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PIGTQ969N2 578 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 VPS33AQ96AX1 596 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 ARL5BQ96KC2 179 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 USB1Q9BQ65 265 aaKnown RBP17.21■□□□□ 0.35
USP40-207ENST00000450940 TMEM204Q9BSN7 226 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 SLCO1B3Q9NPD5 702 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 DLL4Q9NR61 685 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 THUMPD1Q9NXG2 353 aaKnown RBP17.21■□□□□ 0.35
USP40-207ENST00000450940 CALML5Q9NZT1 146 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 P2RX2Q9UBL9 471 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 TRAPPC4Q9Y296 219 aa17.21■□□□□ 0.35
USP40-207ENST00000450940 ARID1AO14497 2285 aa17.21■□□□□ 0.34
USP40-207ENST00000450940 AP3D1O14617 1153 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 CNOT4O95628 575 aaKnown RBP17.2■□□□□ 0.34
USP40-207ENST00000450940 TFPIP10646 304 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 ETFAP13804 333 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 FOSL1P15407 271 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 HOXB9P17482 250 aaPredicted RBP17.2■□□□□ 0.34
USP40-207ENST00000450940 SLC1A3P43003 542 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 NR1H2P55055 460 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 EPS8Q12929 822 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 GTDC1Q4AE62 458 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 MRPL2Q5T653 305 aaKnown RBP17.2■□□□□ 0.34
USP40-207ENST00000450940 DNAJC14Q6Y2X3 702 aaPredicted RBP17.2■□□□□ 0.34
USP40-207ENST00000450940 C20orf204Q6ZNR8 217 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 Q6ZT83 130 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 PEX5LQ8IYB4 626 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 ZNF440Q8IYI8 595 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 LRRC8CQ8TDW0 803 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 SLC38A5Q8WUX1 472 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 S100PBPQ96BU1 408 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 ZNF300Q96RE9 604 aaPredicted RBP17.2■□□□□ 0.34
USP40-207ENST00000450940 ADAM19Q9H013 955 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 PAIP1Q9H074 479 aaKnown RBP17.2■□□□□ 0.34
USP40-207ENST00000450940 TCF7L2Q9NQB0 619 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 OSGIN1Q9UJX0 560 aa17.2■□□□□ 0.34
USP40-207ENST00000450940 TMED7-TICAM2A0A0A6YYA0 188 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 CDHR4A6H8M9 788 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 ZNF716A6NP11 495 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 ZNF208O43345 1280 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 ANP32DO95626 131 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 ADAP00813 363 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 BMP2P12643 396 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 CRATP43155 626 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 IDH3AP50213 366 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 POLR2HP52434 150 aaKnown RBP17.19■□□□□ 0.34
USP40-207ENST00000450940 DSTNP60981 165 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 H3F3AP84243 136 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 ITGADQ13349 1161 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 ZSWIM7Q19AV6 140 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 FUNDC1Q8IVP5 155 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 LRRC75A-AS1Q8N1F1 130 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 OR52P1PQ8NH57 321 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 IGFBPL1Q8WX77 278 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 HSD17B8Q92506 261 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 AURKBQ96GD4 344 aaPredicted RBP17.19■□□□□ 0.34
USP40-207ENST00000450940 CCDC28BQ9BUN5 200 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 TMEM45AQ9NWC5 275 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 TMED7Q9Y3B3 224 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 PCDHB14Q9Y5E9 798 aa17.19■□□□□ 0.34
USP40-207ENST00000450940 A0A0G2JPF8 293 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 CFAP73A6NFT4 308 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 HNRNPCL2B2RXH8 293 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 HNRNPCL3B7ZW38 293 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 POLR3GO15318 223 aaPredicted RBP17.18■□□□□ 0.34
USP40-207ENST00000450940 HNRNPCL1O60812 293 aaKnown RBP17.18■□□□□ 0.34
USP40-207ENST00000450940 HNRNPCL4P0DMR1 293 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 EDNRAP25101 427 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 SLC16A1P53985 500 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 CRISP3P54108 245 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 NKX6-1P78426 367 aaPredicted RBP17.18■□□□□ 0.34
USP40-207ENST00000450940 C6orf10Q5SRN2 563 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 SHEQ5VZ18 495 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 BLOC1S3Q6QNY0 202 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 GALNT5Q7Z7M9 940 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 WFDC8Q8IUA0 241 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 WFDC11Q8NEX6 87 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 KISS1RQ969F8 398 aaPredicted RBP17.18■□□□□ 0.34
USP40-207ENST00000450940 ZHX1-C8orf76Q96EF9 292 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 PLPPR2Q96GM1 343 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 EBF4Q9BQW3 602 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 OR11A1Q9GZK7 315 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 UBTD1Q9HAC8 227 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 SLC52A3Q9NQ40 469 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 EMC3Q9P0I2 261 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 TMEM181Q9P2C4 612 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 PRSS50Q9UI38 385 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 GMEB1Q9Y692 573 aa17.18■□□□□ 0.34
USP40-207ENST00000450940 NIPBLQ6KC79 2804 aaeCLIP17.17■□□□□ 0.34
USP40-207ENST00000450940 A0A096LPI6 279 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 THBS1P07996 1170 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 UQCRBP14927 111 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 IL32P24001 234 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 TACR3P29371 465 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 ACAA2P42765 397 aaKnown RBP17.17■□□□□ 0.34
USP40-207ENST00000450940 IRX1P78414 480 aaPredicted RBP17.17■□□□□ 0.34
USP40-207ENST00000450940 RGNQ15493 299 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 TSC22D1Q15714 1073 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 TAB1Q15750 504 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 LIN52Q52LA3 116 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms