RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SMU1Q2TAY7 513 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 TMEM249Q2WGJ8 235 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ELOA3BQ3SY89 546 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ANXA8L1Q5VT79 327 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 SEZ6L2Q6UXD5 910 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.71□□□□□ -0.53
HMGB3-204ENST00000448905 GRINAQ7Z429 371 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 RIBC1Q8N443 379 aaPredicted RBP11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ARFGAP2Q8N6H7 521 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ELOA3Q8NG57 546 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 EPS8L3Q8TE67 593 aaKnown RBP11.71□□□□□ -0.53
HMGB3-204ENST00000448905 PROX1Q92786 737 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.71□□□□□ -0.53
HMGB3-204ENST00000448905 TMEM160Q9NX00 188 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 GIMAP2Q9UG22 337 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 WDR45Q9Y484 360 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 SLC25A15Q9Y619 301 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ATP23Q9Y6H3 246 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 RNF103-CHMP3A0A140T963 221 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 PRSS51A0A1B0GVH4 220 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 RNASET2O00584 256 aaKnown RBP11.7□□□□□ -0.54
HMGB3-204ENST00000448905 UQCRC2P22695 453 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 APOBEC3AP31941 199 aaPredicted RBP11.7□□□□□ -0.54
HMGB3-204ENST00000448905 EFNA4P52798 201 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 OR2B6P58173 313 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 RPS26P62854 115 aaKnown RBP11.7□□□□□ -0.54
HMGB3-204ENST00000448905 IRX1P78414 480 aaPredicted RBP11.7□□□□□ -0.54
HMGB3-204ENST00000448905 VLDLRP98155 873 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 IFFO1Q0D2I5 559 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 GNA13Q14344 377 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 C6orf52Q5T4I8 152 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 C17orf78Q8N4C9 275 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 OR4A15Q8NGL6 344 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 MIPOL1Q8TD10 442 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 NANOS1Q8WY41 292 aaKnown RBP11.7□□□□□ -0.54
HMGB3-204ENST00000448905 ZNF524Q96C55 264 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 DDIT4LQ96D03 193 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 SLC35G5Q96KT7 338 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 C3orf30Q96M34 536 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 ZIM3Q96PE6 472 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 MECRQ9BV79 373 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 CCDC106Q9BWC9 280 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 C1QTNF6Q9BXI9 259 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 AMBRA1Q9C0C7 1298 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 ZNF350Q9GZX5 532 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 SHARPINQ9H0F6 387 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 OR51I1Q9H343 314 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 CTPS2Q9NRF8 586 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 NPAP1Q9NZP6 1156 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 TMEM181Q9P2C4 612 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 ZDHHC2Q9UIJ5 367 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 PRDM4Q9UKN5 801 aa11.7□□□□□ -0.54
HMGB3-204ENST00000448905 CHD3Q12873 2000 aaKnown RBP11.69□□□□□ -0.54
HMGB3-204ENST00000448905 ZNF716A6NP11 495 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 H7C417 338 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 SKAP2O75563 359 aaPredicted RBP11.69□□□□□ -0.54
HMGB3-204ENST00000448905 WNT11O96014 354 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 F12P00748 615 aaPredicted RBP11.69□□□□□ -0.54
HMGB3-204ENST00000448905 NUDT17P0C025 328 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 OR12D1P0DN82 309 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 UQCRBP14927 111 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 USF1P22415 310 aaPredicted RBP11.69□□□□□ -0.54
HMGB3-204ENST00000448905 PAX7P23759 505 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 PGM1P36871 562 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 ANXA11P50995 505 aaKnown RBP11.69□□□□□ -0.54
HMGB3-204ENST00000448905 SLC16A1P53985 500 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 CASP9P55211 416 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 PRPS1P60891 318 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 SLC35A1P78382 337 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 KCNJ10P78508 379 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 HPCAP84074 193 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 GABRA6Q16445 453 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 AP1ARQ63HQ0 302 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 ABLIM2Q6H8Q1 611 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 PHC2Q8IXK0 858 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 GSPT2Q8IYD1 628 aaKnown RBP11.69□□□□□ -0.54
HMGB3-204ENST00000448905 TCP10LQ8TDR4 215 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 ROPN1LQ96C74 230 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 DPY30Q9C005 99 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 EXOSC3Q9NQT5 275 aaKnown RBP11.69□□□□□ -0.54
HMGB3-204ENST00000448905 SLC17A7Q9P2U7 560 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 MALT1Q9UDY8 824 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 KCNE5Q9UJ90 142 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 DCTN4Q9UJW0 460 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 SLC9A8Q9Y2E8 581 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 AMDHD2Q9Y303 409 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 CSPG4Q6UVK1 2322 aa11.69□□□□□ -0.54
HMGB3-204ENST00000448905 A0A1W2PR80 420 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 VSTM5A8MXK1 200 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 PHF1O43189 567 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 CPSF4O95639 269 aaKnown RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 CCNA2P20248 432 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 EDNRAP25101 427 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 THBS2P35442 1172 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 CHI3L1P36222 383 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 IDH2P48735 452 aaKnown RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 LSM11P83369 360 aaKnown RBP eCLIP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 GPAT3Q53EU6 434 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 OR4F3Q6IEY1 312 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 C11orf71Q6IPW1 123 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms