RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 CHMP6Q96FZ7 201 aa12.54□□□□□ -0.4
HMGN1-208ENST00000443046 ARL5BQ96KC2 179 aa12.54□□□□□ -0.4
HMGN1-208ENST00000443046 PLK3Q9H4B4 646 aa12.54□□□□□ -0.4
HMGN1-208ENST00000443046 TUBB1Q9H4B7 451 aa12.54□□□□□ -0.4
HMGN1-208ENST00000443046 SLC7A10Q9NS82 523 aa12.54□□□□□ -0.4
HMGN1-208ENST00000443046 TMED5Q9Y3A6 229 aa12.54□□□□□ -0.4
HMGN1-208ENST00000443046 HDGFL3Q9Y3E1 203 aa12.54□□□□□ -0.4
HMGN1-208ENST00000443046 CENPVL1A0A0U1RR11 272 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 PDE5AO76074 875 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 SLU7O95391 586 aaKnown RBP12.53□□□□□ -0.4
HMGN1-208ENST00000443046 SRP14P37108 136 aaKnown RBP12.53□□□□□ -0.4
HMGN1-208ENST00000443046 APOBEC1P41238 236 aaKnown RBP12.53□□□□□ -0.4
HMGN1-208ENST00000443046 ASMTP46597 345 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 CLK1P49759 484 aaKnown RBP12.53□□□□□ -0.4
HMGN1-208ENST00000443046 PPOXP50336 477 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 CHN2P52757 468 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 CDH15P55291 814 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 DNAJB13P59910 316 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 PRPS1P60891 318 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 ADIPOQQ15848 244 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 CARTPTQ16568 116 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 CLEC6AQ6EIG7 209 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 C8orf74Q6P047 294 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 ZYG11AQ6WRX3 759 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 R3HCC1LQ7Z5L2 792 aaKnown RBP12.53□□□□□ -0.4
HMGN1-208ENST00000443046 ZNF614Q8N883 585 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 FAM71CQ8NEG0 241 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 OR56A1Q8NGH5 318 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 ACMSDQ8TDX5 336 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 TMEM234Q8WY98 164 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 ZHX1-C8orf76Q96EF9 292 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 VRK1Q99986 396 aaPredicted RBP12.53□□□□□ -0.4
HMGN1-208ENST00000443046 CA10Q9NS85 328 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 PARPBPQ9NWS1 579 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 CHRNA9Q9UGM1 479 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 PYCARDQ9ULZ3 195 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 TRAPPC4Q9Y296 219 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 FLVCR1Q9Y5Y0 555 aa12.53□□□□□ -0.4
HMGN1-208ENST00000443046 IGHV1-18A0A0C4DH31 117 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 EXOC1LA0A1B0GW35 172 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 LSM1O15116 133 aaKnown RBP12.52□□□□□ -0.41
HMGN1-208ENST00000443046 FCMRO60667 390 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 CRCPO75575 148 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 UGT2B17O75795 530 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 WNT11O96014 354 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 KRT16P08779 473 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 LAMP1P11279 417 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 BCKDHAP12694 445 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 PGCP20142 388 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 FKBP2P26885 142 aaKnown RBP12.52□□□□□ -0.41
HMGN1-208ENST00000443046 MPGP29372 298 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 MAGEA8P43361 318 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 IDH3GP51553 393 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-208ENST00000443046 DVL1P1P54792 670 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-208ENST00000443046 TGFBR3Q03167 851 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 TP53BP2Q13625 1128 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 TSPO2Q5TGU0 170 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 C9orf135Q5VTT2 229 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 SLC46A3Q7Z3Q1 461 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 OR7A2PQ8NGA2 310 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 SFXN5Q8TD22 340 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 MZB1Q8WU39 189 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 OR5P2Q8WZ92 322 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 OR7D2Q96RA2 312 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 CTPS2Q9NRF8 586 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 METRNQ9UJH8 293 aa12.52□□□□□ -0.41
HMGN1-208ENST00000443046 FAF1Q9UNN5 650 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-208ENST00000443046 SPIN1Q9Y657 262 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-208ENST00000443046 TMEM89A2RUT3 159 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 ANKRD28O15084 1053 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 SCAMP2O15127 329 aaKnown RBP12.51□□□□□ -0.41
HMGN1-208ENST00000443046 MYL2P10916 166 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 NEFHP12036 1026 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 APEX1P27695 318 aaKnown RBP12.51□□□□□ -0.41
HMGN1-208ENST00000443046 PGM1P36871 562 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 RPL38P63173 70 aaKnown RBP12.51□□□□□ -0.41
HMGN1-208ENST00000443046 RIN1Q13671 783 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 SLC17A1Q14916 467 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 CASP12Q6UXS9 341 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 ADGRG3Q86Y34 549 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 ZNF786Q8N393 782 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 OR5D16Q8NGK9 328 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 TMEM45BQ96B21 275 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 SLC38A2Q96QD8 506 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 FMO2Q99518 471 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 KATNB1Q9BVA0 655 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 RAB1BQ9H0U4 201 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 SERHL2Q9H4I8 314 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 OBP2BQ9NPH6 170 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 UPB1Q9UBR1 384 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 DCDC2Q9UHG0 476 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 SLC9A8Q9Y2E8 581 aa12.51□□□□□ -0.41
HMGN1-208ENST00000443046 AZIN1O14977 448 aa12.5□□□□□ -0.41
HMGN1-208ENST00000443046 BCAS1O75363 584 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-208ENST00000443046 CYP7B1O75881 506 aa12.5□□□□□ -0.41
HMGN1-208ENST00000443046 CSTAP01040 98 aa12.5□□□□□ -0.41
HMGN1-208ENST00000443046 PROCP04070 461 aa12.5□□□□□ -0.41
HMGN1-208ENST00000443046 IGFBP1P08833 259 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-208ENST00000443046 ABHD2P08910 425 aa12.5□□□□□ -0.41
HMGN1-208ENST00000443046 OR4A8P0C604 315 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms