RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SPATA9Q9BWV2 254 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 CLEC4MQ9H2X3 399 aaPredicted RBP13.56□□□□□ -0.24
LIMS3-201ENST00000437679 RASSF1Q9NS23 344 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 MRGBPQ9NV56 204 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 KLHL9Q9P2J3 617 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 KLHL13Q9P2N7 655 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 PRDM4Q9UKN5 801 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 TMED7Q9Y3B3 224 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 HDGFL3Q9Y3E1 203 aa13.56□□□□□ -0.24
LIMS3-201ENST00000437679 PDZD2O15018 2839 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 FAM221AA4D161 298 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 C16orf97H3BN30 126 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 ATP8B1O43520 1251 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 GOSR1O95249 250 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 PGM3O95394 542 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 YES1P07947 543 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 GKN3PP0CG01 181 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 ARAFP10398 606 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 ETS2P15036 469 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 CCNA2P20248 432 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 TACR3P29371 465 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 UGT2B10P36537 528 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 CDK6Q00534 326 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 GUCY1A3Q02108 690 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 DLEU7Q6UYE1 221 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 BEND4Q6ZU67 534 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 DHDDSQ86SQ9 333 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 TUSC5Q8IXB3 177 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 DPP10Q8N608 796 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 NFKBIDQ8NI38 313 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 ZHX1-C8orf76Q96EF9 292 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 KLHL4Q9C0H6 718 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 C12orf49Q9H741 205 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 OSGIN1Q9UJX0 560 aa13.55□□□□□ -0.24
LIMS3-201ENST00000437679 SMAD9O15198 467 aaKnown RBP13.54□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF208O43345 1280 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 PMS2P2O95744 297 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 FESP07332 822 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 GPX2P18283 190 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 SLC6A2P23975 617 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 MAP2K6P52564 334 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 RASGEF1BQ0VAM2 473 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 NFYCQ13952 458 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 RUNDC3AQ59EK9 446 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 WBP2NLQ6ICG8 309 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 REEP3Q6NUK4 255 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 KRT73Q86Y46 540 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 CLIP4Q8N3C7 705 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 CADM2Q8N3J6 435 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 DDIT4LQ96D03 193 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 CPPED1Q9BRF8 314 aaPredicted RBP13.54□□□□□ -0.24
LIMS3-201ENST00000437679 MED18Q9BUE0 208 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 SPATA5L1Q9BVQ7 753 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 OR11A1Q9GZK7 315 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 IKZF5Q9H5V7 419 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 CCDC134Q9H6E4 229 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 TMEM38AQ9H6F2 299 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 ZNF226Q9NYT6 803 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 TESMINQ9Y4I5 508 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 CSMD2Q7Z408 3487 aa13.54□□□□□ -0.24
LIMS3-201ENST00000437679 DNPH1O43598 174 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 CYTIPO60759 359 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 CXCR1P25024 350 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 MDH1P40925 334 aaKnown RBP13.53□□□□□ -0.24
LIMS3-201ENST00000437679 ACAA2P42765 397 aaKnown RBP13.53□□□□□ -0.24
LIMS3-201ENST00000437679 OR2B6P58173 313 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 SF3A3Q12874 501 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIMS3-201ENST00000437679 SCARB2Q14108 478 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 NUFIP2Q7Z417 695 aaKnown RBP13.53□□□□□ -0.24
LIMS3-201ENST00000437679 MTDHQ86UE4 582 aaKnown RBP13.53□□□□□ -0.24
LIMS3-201ENST00000437679 RETREG3Q86VR2 466 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 CDC20BQ86Y33 519 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 C10orf111Q8N326 155 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 SLC35B4Q969S0 331 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 ARL5BQ96KC2 179 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 ANKRD27Q96NW4 1050 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 WFIKKN1Q96NZ8 548 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 CGREF1Q99674 301 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 PSD2Q9BQI7 771 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 ADAM19Q9H013 955 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 BCO1Q9HAY6 547 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 KLHL28Q9NXS3 571 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 TMEM181Q9P2C4 612 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 ITGB1BP2Q9UKP3 347 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 TRAPPC4Q9Y296 219 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 FREM1Q5H8C1 2179 aa13.53□□□□□ -0.24
LIMS3-201ENST00000437679 TMEM72A0PK05 275 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 PRKAR1BP31321 381 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 CCKARP32238 428 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 CYP51A1Q16850 503 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 CGB2Q6NT52 195 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 SERPINA11Q86U17 422 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 HIPK4Q8NE63 616 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 DNAJA3Q96EY1 480 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 ZNF607Q96SK3 696 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 EDARQ9UNE0 448 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 ANGPT4Q9Y264 503 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 CHST2Q9Y4C5 530 aa13.52□□□□□ -0.25
LIMS3-201ENST00000437679 PRORSD1PA6NEY8 169 aa13.51□□□□□ -0.25
LIMS3-201ENST00000437679 ZNF724A8MTY0 619 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms