RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TGIF2LYQ8IUE0 185 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 FAM109AQ8N4B1 249 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 SLC35B4Q969S0 331 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 ZG16BQ96DA0 208 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF347Q96SE7 839 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 SECISBP2Q96T21 854 aaKnown RBP11□□□□□ -0.65
PTPRF-208ENST00000437607 FOXC2Q99958 501 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 IL1RAPQ9NPH3 570 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 DNAJB12Q9NXW2 375 aaKnown RBP11□□□□□ -0.65
PTPRF-208ENST00000437607 TUBA8Q9NY65 449 aaPredicted RBP11□□□□□ -0.65
PTPRF-208ENST00000437607 STX18Q9P2W9 335 aaKnown RBP11□□□□□ -0.65
PTPRF-208ENST00000437607 SPRR3Q9UBC9 169 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 ENPP4Q9Y6X5 453 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 HEATR5AQ86XA9 2040 aa11□□□□□ -0.65
PTPRF-208ENST00000437607 FAM221AA4D161 298 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 FIGNL2A6NMB9 653 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 TMEM229AB2RXF0 380 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 E2F6O75461 281 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 ANGPTL1O95841 491 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 EPPINO95925 133 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 CD226Q15762 336 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 ATP6AP1Q15904 470 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 FNDC7Q5VTL7 733 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 DESI1Q6ICB0 168 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 COMTD1Q86VU5 262 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 GRAMD2AQ8IUY3 354 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 CLIP4Q8N3C7 705 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 OR6T1Q8NGN1 323 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 LRTOMTQ8WZ04 291 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 SGCZQ96LD1 299 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 PRRC1Q96M27 445 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF300Q96RE9 604 aaPredicted RBP10.99□□□□□ -0.65
PTPRF-208ENST00000437607 NODALQ96S42 347 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 SH2D2AQ9NP31 389 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 EXOSC3Q9NQT5 275 aaKnown RBP10.99□□□□□ -0.65
PTPRF-208ENST00000437607 RLIMQ9NVW2 624 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 WIF1Q9Y5W5 379 aa10.99□□□□□ -0.65
PTPRF-208ENST00000437607 CLOCKO15516 846 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF264O43296 627 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 HCRTR2O43614 444 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SUSD5O60279 629 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 FADS1O60427 444 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 WDR1O75083 606 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 RFPL3SP0C7P2 107 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 RHCEP18577 417 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SLC6A8P48029 635 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 TAS2R41P59536 307 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SKP2Q13309 424 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SNCBQ16143 134 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 NDUFAF6Q330K2 333 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 C1orf185Q5T7R7 199 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 PRAMEF20Q5VT98 475 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 OR2T5Q6IEZ7 315 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 ARSKQ6UWY0 536 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SEM1Q6ZVN7 128 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 PIWIL3Q7Z3Z3 882 aaKnown RBP10.98□□□□□ -0.65
PTPRF-208ENST00000437607 MARCH3Q86UD3 253 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 LACC1Q8IV20 430 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 ICA1LQ8NDH6 482 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 FAM71CQ8NEG0 241 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 OR2T29Q8NH02 315 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 CNOT9Q92600 299 aaKnown RBP10.98□□□□□ -0.65
PTPRF-208ENST00000437607 NINJ1Q92982 152 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SH3YL1Q96HL8 342 aaPredicted RBP10.98□□□□□ -0.65
PTPRF-208ENST00000437607 C7orf34Q96L11 122 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 MCHR1Q99705 422 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 PIP5K1AQ99755 562 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 PKP2Q99959 881 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 BDH2Q9BUT1 245 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 AMBRA1Q9C0C7 1298 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 POLR2J2Q9GZM3 115 aaKnown RBP10.98□□□□□ -0.65
PTPRF-208ENST00000437607 POLR2J3Q9H1A7 115 aaKnown RBP10.98□□□□□ -0.65
PTPRF-208ENST00000437607 RASSF4Q9H2L5 321 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 REEP1Q9H902 201 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 PROK2Q9HC23 129 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SLC24A3Q9HC58 644 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SDHAF3Q9NRP4 125 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 SACM1LQ9NTJ5 587 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 NDUFAF4Q9P032 175 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 PPP4R1LQ9P1A2 415 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 STOML1Q9UBI4 398 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 RPS6KB2Q9UBS0 482 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 DNAJB9Q9UBS3 223 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 ST6GALNAC2Q9UJ37 374 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 RIMS3Q9UJD0 308 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 TESMINQ9Y4I5 508 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 CHCHD2Q9Y6H1 151 aaPredicted RBP10.98□□□□□ -0.65
PTPRF-208ENST00000437607 ZANQ9Y493 2812 aa10.98□□□□□ -0.65
PTPRF-208ENST00000437607 CPSF4LA6NMK7 179 aaKnown RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 KDM4EB2RXH2 506 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 FAM47E-STBD1D6RA91 191 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 EIF4E2O60573 245 aaKnown RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 FMO6PO60774 539 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 BCAS1O75363 584 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 DIRAS1O95057 198 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 NUDT14O95848 222 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 P04436 131 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 GKN3PP0CG01 181 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF23P17027 643 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 KLK2P20151 261 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms