RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CALHM2Q9HA72 323 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 CACYBPQ9HB71 228 aaKnown RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 CLCF1Q9UBD9 225 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 TESQ9UGI8 421 aaKnown RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 BAG5Q9UL15 447 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 PRPF19Q9UMS4 504 aaKnown RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 CAMK2AQ9UQM7 478 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 TMED7-TICAM2A0A0A6YYA0 188 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 A0A1B0GUH1 482 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 TMEM72A0PK05 275 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 ZC3H12DA2A288 527 aaKnown RBP11.15□□□□□ -0.62
USP40-205ENST00000430158 CD8B2A6NJW9 211 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 CCL21O00585 134 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 ACOT8O14734 319 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 GSTA4O15217 222 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 ZNF208O43345 1280 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 FZD7O75084 574 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 SERPINA1P01009 418 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 LDLRP01130 860 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 SEMG1P04279 462 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 GABRA1P14867 456 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 TCN1P20061 433 aaPredicted RBP11.15□□□□□ -0.62
USP40-205ENST00000430158 ATP6V1B2P21281 511 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 CEACAM8P31997 349 aaPredicted RBP11.15□□□□□ -0.62
USP40-205ENST00000430158 GCKP35557 465 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 HTR3AP46098 478 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 POLR2HP52434 150 aaKnown RBP11.15□□□□□ -0.62
USP40-205ENST00000430158 SRYQ05066 204 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 TRIM25Q14258 630 aaKnown RBP11.15□□□□□ -0.62
USP40-205ENST00000430158 OR1Q1Q15612 314 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 TMEM176BQ3YBM2 270 aaPredicted RBP11.15□□□□□ -0.62
USP40-205ENST00000430158 POMZP3Q6PJE2 187 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 PLXDC2Q6UX71 529 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 RPTNQ6XPR3 784 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 ESPNLQ6ZVH7 1005 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 FJX1Q86VR8 437 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 CARM1Q86X55 608 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 ZNF845Q96IR2 970 aaPredicted RBP11.15□□□□□ -0.62
USP40-205ENST00000430158 KLHL15Q96M94 604 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 TTYH2Q9BSA4 534 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 TRIM2Q9C040 744 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 C12orf10Q9HB07 376 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 KLHL28Q9NXS3 571 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 CHRNA9Q9UGM1 479 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 SLC5A6Q9Y289 635 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 TMED7Q9Y3B3 224 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 SNX13Q9Y5W8 968 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 PKDREJQ9NTG1 2253 aa11.15□□□□□ -0.62
USP40-205ENST00000430158 PRR14LQ5THK1 2151 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 UTP20O75691 2785 aaKnown RBP11.14□□□□□ -0.63
USP40-205ENST00000430158 IGKV1D-42A0A075B6H8 117 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 TCRBV5S2A0A599 114 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 MBD3L4A6NDZ8 208 aaPredicted RBP11.14□□□□□ -0.63
USP40-205ENST00000430158 MBD3L3A6NE82 208 aaPredicted RBP11.14□□□□□ -0.63
USP40-205ENST00000430158 MBD3L5A6NJ08 208 aaPredicted RBP11.14□□□□□ -0.63
USP40-205ENST00000430158 FIGNL2A6NMB9 653 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 CLCA1A8K7I4 914 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 GSC2O15499 205 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 PDE5AO76074 875 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 TGM6O95932 706 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 UQCRBP14927 111 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 FUT4P22083 530 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 OR1E2P47887 323 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 CLK1P49759 484 aaKnown RBP11.14□□□□□ -0.63
USP40-205ENST00000430158 MAP2K6P52564 334 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 NUP107P57740 925 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 NCALDP61601 193 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 EGR4Q05215 589 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 BNIP2Q12982 314 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 SYT14P1Q58G82 188 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 SWT1Q5T5J6 900 aaKnown RBP11.14□□□□□ -0.63
USP40-205ENST00000430158 C3orf33Q6P1S2 294 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 WDR88Q6ZMY6 472 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 UBQLNLQ8IYU4 475 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 EID3Q8N140 333 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 CADM2Q8N3J6 435 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 MEIOBQ8N635 442 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 C9orf106Q8NAJ2 232 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 OR10D3Q8NH80 312 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 OR2V1Q8NHB1 315 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 MBD3L2Q8NHZ7 208 aaPredicted RBP11.14□□□□□ -0.63
USP40-205ENST00000430158 SLC26A7Q8TE54 656 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 PROX1Q92786 737 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 SLC38A4Q969I6 547 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 CCDC120Q96HB5 630 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 HSH2DQ96JZ2 352 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 ARL5BQ96KC2 179 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 C7orf34Q96L11 122 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 MCHR1Q99705 422 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 THTPAQ9BU02 230 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 SRXN1Q9BYN0 137 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 AMBRA1Q9C0C7 1298 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 OR11A1Q9GZK7 315 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 ACTR3BQ9P1U1 418 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 MAGEL2Q9UJ55 1249 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 SH3BGRL2Q9UJC5 107 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 SH3GLB1Q9Y371 365 aa11.14□□□□□ -0.63
USP40-205ENST00000430158 A0A087WUJ7 227 aa11.13□□□□□ -0.63
USP40-205ENST00000430158 A0A1W2PNR3 127 aa11.13□□□□□ -0.63
USP40-205ENST00000430158 H0Y3Z8 333 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms