RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 OSGIN1Q9UJX0 560 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 ACAD8Q9UKU7 415 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 A4GNTQ9UNA3 340 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 U3KQV3 271 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 MAP1BP46821 2468 aaKnown RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 DNAJC13O75165 2243 aa9.15□□□□□ -0.95
CD44-207ENST00000425428 PINLYPA6NC86 204 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 NPIPA5E9PKD4 350 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 BCAS1O75363 584 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 RFPL3SP0C7P2 107 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 ANPEPP15144 967 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 HTR2AP28223 471 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 UGT2B15P54855 530 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 CSNK2A1P68400 391 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 RIPK1Q13546 671 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 TOMM34Q15785 309 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 ARHGAP11AQ6P4F7 1023 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 PM20D2Q8IYS1 436 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 LILRA2Q8N149 483 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 GHDCQ8N2G8 530 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 OR5K1Q8NHB7 308 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 GIPC3Q8TF64 312 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 ABTB1Q969K4 478 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 SLCO4A1Q96BD0 722 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 TMEM43Q9BTV4 400 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 PRR14Q9BWN1 585 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 TEX12Q9BXU0 123 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 SEMA6AQ9H2E6 1030 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 RASSF4Q9H2L5 321 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 UBQLN3Q9H347 655 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 NPIPA1Q9UND3 350 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 LHX6Q9UPM6 363 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 CELSR3Q9NYQ7 3312 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 OR2M5A3KFT3 312 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 TMEM229AB2RXF0 380 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 K7EM74 188 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 OR6A2O95222 327 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 SAGP10523 405 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 ANXA8P13928 327 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 CDH2P19022 906 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 PMP22Q01453 160 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 SGCBQ16585 318 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 SYT14P1Q58G82 188 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 WLSQ5T9L3 541 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 MBOAT2Q6ZWT7 520 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 AMIGO2Q86SJ2 522 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 ATG4DQ86TL0 474 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 COMTD1Q86VU5 262 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 ATG16L2Q8NAA4 619 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 NEIL3Q8TAT5 605 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 DNAJC9Q8WXX5 260 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 NTNG2Q96CW9 530 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 ASPNQ9BXN1 380 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 ZDHHC11Q9H8X9 412 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 RNPEPL1Q9HAU8 725 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 PDP1Q9P0J1 537 aaPredicted RBP9.14□□□□□ -0.95
CD44-207ENST00000425428 LUZP4Q9P127 313 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 NTNG1Q9Y2I2 539 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 HDGFL3Q9Y3E1 203 aa9.14□□□□□ -0.95
CD44-207ENST00000425428 CACNA1GO43497 2377 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 CACNA1BQ00975 2339 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 NCKAP5O14513 1909 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 TRAV36DV7A0A075B6V5 113 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 ETV2O00321 342 aaPredicted RBP9.13□□□□□ -0.95
CD44-207ENST00000425428 MGRN1O60291 552 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 ZIC3O60481 467 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 SYNGR4O95473 234 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 GSTM3P21266 225 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 SFTPDP35247 375 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 IDUAP35475 653 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 HMGA2P52926 109 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 CASP6P55212 293 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 SLC34A1Q06495 639 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 CRYZQ08257 329 aaKnown RBP9.13□□□□□ -0.95
CD44-207ENST00000425428 LY6DQ14210 128 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 TRIP10Q15642 601 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 MICAQ29983 383 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 EXOC3L2Q2M3D2 409 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 TMEM176BQ3YBM2 270 aaPredicted RBP9.13□□□□□ -0.95
CD44-207ENST00000425428 PODNL1Q6PEZ8 512 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 SHQ1Q6PI26 577 aaKnown RBP9.13□□□□□ -0.95
CD44-207ENST00000425428 ESPNLQ6ZVH7 1005 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 STK32CQ86UX6 486 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 CISD2Q8N5K1 135 aaKnown RBP9.13□□□□□ -0.95
CD44-207ENST00000425428 EXD3Q8N9H8 876 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 GNPDA2Q8TDQ7 276 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 SGTBQ96EQ0 304 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 OR5B2Q96R09 309 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 NAA11Q9BSU3 229 aaPredicted RBP9.13□□□□□ -0.95
CD44-207ENST00000425428 POTEKPQ9BYX7 375 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 PRRG4Q9BZD6 226 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 MGAT4BQ9UQ53 548 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 LYVE1Q9Y5Y7 322 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 SVILO95425 2214 aa9.13□□□□□ -0.95
CD44-207ENST00000425428 TMEM72A0PK05 275 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SH3PXD2BA1X283 911 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 OR14I1A6ND48 311 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ARRDC5A6NEK1 342 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 C17orf51A8MQB3 221 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SULT2B1O00204 365 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms