RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 IGHV3-15A0A0B4J1V0 119 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 NPIPA5A0A0B4J1W7 369 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 DPRXA6NFQ7 191 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 TTC36A6NLP5 189 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 NPIPA7E9PJI5 369 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 CLIC1O00299 241 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 ADAMDEC1O15204 470 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 ATP5HO75947 161 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 CD8AP01732 235 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 THBS1P07996 1170 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 KRT16P08779 473 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 NPIPA8P0DM63 369 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 PPP3CBP16298 524 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 PSMB1P20618 241 aaKnown RBP11.45□□□□□ -0.58
LINC00339-202ENST00000416769 PPIBP23284 216 aaKnown RBP11.45□□□□□ -0.58
LINC00339-202ENST00000416769 MAGEA8P43361 318 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 PRKAG1P54619 331 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 TXNL4AP83876 142 aaKnown RBP11.45□□□□□ -0.58
LINC00339-202ENST00000416769 BSPH1Q075Z2 132 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 C17orf67Q0P5P2 114 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 FOXF1Q12946 379 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 BNIP1Q12981 228 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 TRMT5Q32P41 509 aaKnown RBP11.45□□□□□ -0.58
LINC00339-202ENST00000416769 SPDYE7PQ495Y7 208 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 GLYR1Q49A26 553 aaPredicted RBP11.45□□□□□ -0.58
LINC00339-202ENST00000416769 NCMAPQ5T1S8 102 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 SAXO2Q658L1 398 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 HBMQ6B0K9 141 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 DNM1P46Q6ZS02 220 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 TUSC5Q8IXB3 177 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 MSRB3Q8IXL7 192 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 GPR151Q8TDV0 419 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 SMAP2Q8WU79 429 aaPredicted RBP11.45□□□□□ -0.58
LINC00339-202ENST00000416769 HOXB13Q92826 284 aaPredicted RBP11.45□□□□□ -0.58
LINC00339-202ENST00000416769 OSTF1Q92882 214 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 NEURL3Q96EH8 262 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 GIMAP5Q96F15 307 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 C16orf58Q96GQ5 468 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 ANKRD27Q96NW4 1050 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 SH3GL1Q99961 368 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 RAD21L1Q9H4I0 556 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 TPT1P8Q9HAU6 139 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 SLC6A13Q9NSD5 602 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 GIN1Q9NXP7 522 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 SLC25A37Q9NYZ2 338 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 GPR52Q9Y2T5 361 aa11.45□□□□□ -0.58
LINC00339-202ENST00000416769 IGHV4-30-2A0A087WSY4 118 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 A0A096LNT2 108 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 RNF103-CHMP3A0A140T963 221 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 EVPLLA8MZ36 301 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 B2RBV5 119 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 ZNF814B7Z6K7 855 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 ALG1L2C9J202 215 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 LINC01387J3KSC0 135 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 CD5LO43866 347 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 SYNGR4O95473 234 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 HMGN2P05204 90 aaKnown RBP11.44□□□□□ -0.58
LINC00339-202ENST00000416769 ZNF17P17021 662 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 MATN1P21941 496 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 SOAT1P35610 550 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 CHI3L1P36222 383 aaPredicted RBP11.44□□□□□ -0.58
LINC00339-202ENST00000416769 MAP3K8P41279 467 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 NUDT2P50583 147 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 TOMM34Q15785 309 aaPredicted RBP11.44□□□□□ -0.58
LINC00339-202ENST00000416769 ZNF239Q16600 458 aaKnown RBP11.44□□□□□ -0.58
LINC00339-202ENST00000416769 DUSP5Q16690 384 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 GTDC1Q4AE62 458 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 NANOGP8Q6NSW7 305 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 C8orf82Q6P1X6 216 aaPredicted RBP11.44□□□□□ -0.58
LINC00339-202ENST00000416769 BEND4Q6ZU67 534 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 CDRT4Q8N9R6 151 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 SLC16A11Q8NCK7 471 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 OR5AK3PQ8NH89 298 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 MIPOL1Q8TD10 442 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 RNF128Q8TEB7 428 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 FBXW5Q969U6 566 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 GTPBP3Q969Y2 492 aaKnown RBP11.44□□□□□ -0.58
LINC00339-202ENST00000416769 DTNBP1Q96EV8 351 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 MS4A4EQ96PG1 132 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 ACTRT3Q9BYD9 372 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 C1orf21Q9H246 121 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 COQ10BQ9H8M1 238 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 NANOGQ9H9S0 305 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 GPATCH2Q9NW75 528 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 NDE1Q9NXR1 346 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 PRSS50Q9UI38 385 aa11.44□□□□□ -0.58
LINC00339-202ENST00000416769 MCTS1Q9ULC4 181 aaKnown RBP11.44□□□□□ -0.58
LINC00339-202ENST00000416769 DUXAA6NLW8 204 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 FXYD1O00168 92 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 PHF1O43189 567 aaPredicted RBP11.43□□□□□ -0.58
LINC00339-202ENST00000416769 NDUFB5O43674 189 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 HNRNPCL1O60812 293 aaKnown RBP11.43□□□□□ -0.58
LINC00339-202ENST00000416769 NKX2-2O95096 273 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 ADAP00813 363 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 GPX2P18283 190 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 ENPP1P22413 925 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 RAC1P63000 192 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 PSPHP78330 225 aa11.43□□□□□ -0.58
LINC00339-202ENST00000416769 SPOCK1Q08629 439 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms