RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 C5orf46Q6UWT4 87 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 CD300LDQ6UXZ3 194 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 SLC22A16Q86VW1 577 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 ELOA3Q8NG57 546 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 STK35Q8TDR2 534 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 DNAJC9Q8WXX5 260 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 NPAS1Q99742 590 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 RBM4BQ9BQ04 359 aaKnown RBP12.9□□□□□ -0.34
SF3B1-204ENST00000414963 RBM4Q9BWF3 364 aaKnown RBP12.9□□□□□ -0.34
SF3B1-204ENST00000414963 DGCR6LQ9BY27 220 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 KLHL4Q9C0H6 718 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 DKKL1Q9UK85 242 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 MGAT4BQ9UQ53 548 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 VDAC3Q9Y277 283 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 TMED7Q9Y3B3 224 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 MED31Q9Y3C7 131 aa12.9□□□□□ -0.34
SF3B1-204ENST00000414963 CACNA1GO43497 2377 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 MGAQ8IWI9 3026 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 LINC01387J3KSC0 135 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 KLF4O43474 513 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 EFNA2O43921 213 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 OR10H3O60404 316 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 GASTP01350 101 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 ELK4P28324 431 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 VHLP40337 213 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 OMPP47874 163 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 CLK1P49759 484 aaKnown RBP12.89□□□□□ -0.35
SF3B1-204ENST00000414963 ALDH3A2P51648 485 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 UGT2B15P54855 530 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 PPIAP62937 165 aaKnown RBP12.89□□□□□ -0.35
SF3B1-204ENST00000414963 LSM11P83369 360 aaKnown RBP eCLIP12.89□□□□□ -0.35
SF3B1-204ENST00000414963 EGR4Q05215 589 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 DAG1Q14118 895 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 LAPTM4AQ15012 233 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 LRRC36Q1X8D7 754 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 OTUD3Q5T2D3 398 aaPredicted RBP12.89□□□□□ -0.35
SF3B1-204ENST00000414963 KDM4DQ6B0I6 523 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 PGBD2Q6P3X8 592 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 ASB18Q6ZVZ8 466 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 TMPRSS11FQ6ZWK6 438 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 RRM2BQ7LG56 351 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 ZER1Q7Z7L7 766 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 NRMQ8IXM6 262 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 TMEM251Q8N6I4 163 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 FAM98AQ8NCA5 519 aaKnown RBP12.89□□□□□ -0.35
SF3B1-204ENST00000414963 FAM83FQ8NEG4 500 aaPredicted RBP12.89□□□□□ -0.35
SF3B1-204ENST00000414963 OR6S1Q8NH40 331 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 PIGXQ8TBF5 258 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 RNF217Q8TC41 542 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 FEVQ99581 238 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 PIGQQ9BRB3 760 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 ACKR4Q9NPB9 350 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 MEPEQ9NQ76 525 aaPredicted RBP12.89□□□□□ -0.35
SF3B1-204ENST00000414963 SERINC1Q9NRX5 453 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 CHRNA9Q9UGM1 479 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 ZMIZ1Q9ULJ6 1067 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 B3GNT3Q9Y2A9 372 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 TMEM5Q9Y2B1 443 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 TP53TG5Q9Y2B4 290 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 LOC400499M0QZD8 3231 aa12.89□□□□□ -0.35
SF3B1-204ENST00000414963 TMEM72A0PK05 275 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 OR2M5A3KFT3 312 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 A8MVM7 634 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 EI24O14681 340 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 SUSD5O60279 629 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 ADAP00813 363 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 GDF1P27539 372 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 GSSP48637 474 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 DAPP51397 102 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 FOXK1P85037 733 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 PLGLB1Q02325 96 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 COX10Q12887 443 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 INAQ16352 499 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.88□□□□□ -0.357e-11■■□□□ 12.1
SF3B1-204ENST00000414963 PRICKLE2Q7Z3G6 844 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 FAM109AQ8N4B1 249 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 AQP11Q8NBQ7 271 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 OR9Q2Q8NGE9 314 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 C9orf43Q8TAL5 461 aaPredicted RBP12.88□□□□□ -0.35
SF3B1-204ENST00000414963 GNPDA2Q8TDQ7 276 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 LIPHQ8WWY8 451 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 RDH12Q96NR8 316 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 POTEKPQ9BYX7 375 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 VCXQ9H320 206 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 ZDHHC11Q9H8X9 412 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 SMURF2Q9HAU4 748 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 KRCC1Q9NPI7 259 aaPredicted RBP12.88□□□□□ -0.35
SF3B1-204ENST00000414963 TMEFF2Q9UIK5 374 aaPredicted RBP12.88□□□□□ -0.35
SF3B1-204ENST00000414963 SPIN1Q9Y657 262 aaPredicted RBP12.88□□□□□ -0.35
SF3B1-204ENST00000414963 EML6Q6ZMW3 1958 aa12.88□□□□□ -0.35
SF3B1-204ENST00000414963 ACOT7O00154 380 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 FAM87AP0C7U9 286 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 IL11P20809 199 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 CHMP24386 653 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 FPR3P25089 353 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 GFRA1P56159 465 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 FOXD4Q12950 439 aaPredicted RBP12.87□□□□□ -0.35
SF3B1-204ENST00000414963 TSPAN31Q12999 210 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 SELENBP1Q13228 472 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 SLC10A1Q14973 349 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms