RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ZNF101Q8IZC7 436 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 NLGN4YQ8NFZ3 816 aaPredicted RBP17.17■□□□□ 0.34
USP48-204ENST00000400301 RBP7Q96R05 134 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 SNX18Q96RF0 628 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 NMNAT3Q96T66 252 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 FGF20Q9NP95 211 aaPredicted RBP17.17■□□□□ 0.34
USP48-204ENST00000400301 GREB1Q4ZG55 1949 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 LOC100509620A0A075B734 347 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 METTL21EPA6NDL7 271 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 PAHP00439 452 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 F13BP05160 661 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 ZNF20P17024 532 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 SELENBP1Q13228 472 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 LAIR2Q6ISS4 152 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 UBQLNLQ8IYU4 475 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 C19orf47Q8N9M1 422 aaKnown RBP17.17■□□□□ 0.34
USP48-204ENST00000400301 OR2T35Q8NGX2 323 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 ELSPBP1Q96BH3 223 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 HHIPQ96QV1 700 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 CFHR5Q9BXR6 569 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 PBX4Q9BYU1 374 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 ATG5Q9H1Y0 275 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 SLA2Q9H6Q3 261 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 ZSWIM8A7E2V4 1837 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 ACOD1A6NK06 481 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 CCDC85CA6NKD9 419 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 RAD1O60671 282 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 SRPX2O60687 465 aaPredicted RBP17.17■□□□□ 0.34
USP48-204ENST00000400301 DUSP8Q13202 625 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 KLHL26Q53HC5 615 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 OLFML2AQ68BL7 652 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 BEST4Q8NFU0 473 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 SLC35B4Q969S0 331 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 ARHGAP9Q9BRR9 750 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 OR51J1Q9H342 316 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 DHDHQ9UQ10 334 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 CCDC88CQ9P219 2028 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 OTOL1A6NHN0 477 aaPredicted RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 TNFRSF10CO14798 259 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 CHP2O43745 196 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 SBK2P0C263 348 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 MVDP53602 400 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 SIRPAP78324 504 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 LAIR1Q6GTX8 287 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 SLC7A6Q92536 515 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 DPCDQ9BVM2 203 aaPredicted RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 UBQLN4Q9NRR5 601 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 ABRACLQ9P1F3 81 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 GPR55Q9Y2T6 319 aaPredicted RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 SLC22A7Q9Y694 548 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 SURF4O15260 269 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 ZNF595Q8IYB9 648 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 KLHL15Q96M94 604 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 ZNF717Q9BY31 904 aaPredicted RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 MKL2Q9ULH7 1088 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 FARSAQ9Y285 508 aaKnown RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 DICER1Q9UPY3 1922 aaKnown RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 CDC14CA4D256 554 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 ZNF726A6NNF4 738 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 PLRG1O43660 514 aaKnown RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 SOD1P00441 154 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 INHBBP09529 407 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 OR2T7P0C7T2 308 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 OR4D11Q8NGI4 311 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 OR2T27Q8NH04 317 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 STACQ99469 402 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 LMF2Q9BU23 707 aaKnown RBP17.16■□□□□ 0.34
USP48-204ENST00000400301 METTL7AQ9H8H3 244 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 NUBP2Q9Y5Y2 271 aa17.16■□□□□ 0.34
USP48-204ENST00000400301 SERINC4A6NH21 518 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 DUX1O43812 170 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 GCM2O75603 506 aaPredicted RBP17.15■□□□□ 0.34
USP48-204ENST00000400301 HSD11B1P28845 292 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 KIAA1958Q8N8K9 716 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 TP53I13Q8NBR0 393 aaPredicted RBP17.15■□□□□ 0.34
USP48-204ENST00000400301 OR4M1Q8NGD0 313 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 CMKLR1Q99788 373 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 SYNPO2LQ9H987 977 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 CA14Q9ULX7 337 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 AQP2P41181 271 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 OR1D4P47884 311 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 ARPC4P59998 168 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 ASAH1Q13510 395 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 AGERQ15109 404 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 FAM205BPQ63HN1 556 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 RPL22L1Q6P5R6 122 aaKnown RBP17.15■□□□□ 0.34
USP48-204ENST00000400301 SPRED2Q7Z698 418 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 RSC1A1Q92681 617 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 SRRQ9GZT4 340 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 EVA1AQ9H8M9 152 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 KCND3Q9UK17 655 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 A0A0G2JMP0 313 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 A0A0X1KG70 313 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 ZNF432O94892 652 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 MT-ND4P03905 459 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 OR8G3PP0DMU2 310 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 RBMS1P29558 406 aaKnown RBP17.15■□□□□ 0.34
USP48-204ENST00000400301 DHPSP49366 369 aaPredicted RBP17.15■□□□□ 0.34
USP48-204ENST00000400301 WBP2NLQ6ICG8 309 aa17.15■□□□□ 0.34
USP48-204ENST00000400301 NIPAL3Q6P499 406 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms