RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ITGB2P05107 769 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 PRKCAP17252 672 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 CCNA2P20248 432 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 GSTM3P21266 225 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 IGFBP5P24593 272 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 FKBP2P26885 142 aaKnown RBP12.9□□□□□ -0.34
SKA1-202ENST00000398452 GDF1P27539 372 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 SRD5A2P31213 254 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 MEOX1P50221 254 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 TNFSF10P50591 281 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 MAP2K6P52564 334 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 KCNAB2Q13303 367 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 RAET1LQ5VY80 246 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 C5orf46Q6UWT4 87 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 IZUMO2Q6UXV1 221 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 MBOAT2Q6ZWT7 520 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 SLC22A16Q86VW1 577 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 C10orf53Q8N6V4 93 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 AQP11Q8NBQ7 271 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 OR14L1PQ8NHC6 308 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 GNPDA2Q8TDQ7 276 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 TMEM255BQ8WV15 326 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 DDIT4LQ96D03 193 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 GNRHR2Q96P88 292 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 SLC19A3Q9BZV2 496 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 Q9H521 79 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 TUBA8Q9NY65 449 aaPredicted RBP12.9□□□□□ -0.34
SKA1-202ENST00000398452 FBXL2Q9UKC9 423 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 POFUT2Q9Y2G5 429 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 C15orf41Q9Y2V0 281 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 ZNF462Q96JM2 2506 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 COL6A6A6NMZ7 2263 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 A0A087WUU8 490 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 TMED7-TICAM2A0A0A6YYA0 188 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 C17orf51A8MQB3 221 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 KPNA4O00629 521 aaPredicted RBP12.89□□□□□ -0.35
SKA1-202ENST00000398452 SOCS2O14508 198 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 SUSD5O60279 629 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 ADAP00813 363 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 IFI30P13284 250 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 PRKACGP22612 351 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 TCEA1P23193 301 aaKnown RBP12.89□□□□□ -0.35
SKA1-202ENST00000398452 ADH6P28332 368 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 LIMS1P48059 325 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 TOMM34Q15785 309 aaPredicted RBP12.89□□□□□ -0.35
SKA1-202ENST00000398452 TBR1Q16650 682 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 GLYR1Q49A26 553 aaPredicted RBP12.89□□□□□ -0.35
SKA1-202ENST00000398452 ARSKQ6UWY0 536 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 TMEM179BQ7Z7N9 219 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 ATG4DQ86TL0 474 aaPredicted RBP12.89□□□□□ -0.35
SKA1-202ENST00000398452 ZNF227Q86WZ6 799 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 NRMQ8IXM6 262 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 HS3ST5Q8IZT8 346 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 ZNF555Q8NEP9 628 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 OR9Q2Q8NGE9 314 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 NRG4Q8WWG1 115 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 RDH12Q96NR8 316 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 FEVQ99581 238 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 PIGQQ9BRB3 760 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 NDEL1Q9GZM8 345 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 ADAM19Q9H013 955 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 PAPOLBQ9NRJ5 636 aaKnown RBP12.89□□□□□ -0.35
SKA1-202ENST00000398452 MAN2C1Q9NTJ4 1040 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 SMPD3Q9NY59 655 aaPredicted RBP12.89□□□□□ -0.35
SKA1-202ENST00000398452 USE1Q9NZ43 259 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 OSGIN1Q9UJX0 560 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 TMED7Q9Y3B3 224 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 EXPH5Q8NEV8 1989 aa12.89□□□□□ -0.35
SKA1-202ENST00000398452 DOCK10Q96BY6 2186 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 GJE1A6NN92 205 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 A8MVM7 634 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 H0YJX3 145 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 AHSA1O95433 338 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 SAGP10523 405 aaPredicted RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 TFPIP10646 304 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 GTF2E2P29084 291 aaKnown RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 TPD52P55327 224 aaPredicted RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 NUP107P57740 925 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 CRYZQ08257 329 aaKnown RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 COX10Q12887 443 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 FOXF1Q12946 379 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 SELENBP1Q13228 472 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 INPP5JQ15735 1006 aaPredicted RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 PLPPR5Q32ZL2 321 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 WLSQ5T9L3 541 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 IGFL3Q6UXB1 125 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 EPHX4Q8IUS5 362 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 LSM14AQ8ND56 463 aaKnown RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 SLC25A43Q8WUT9 341 aaPredicted RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 EXTL1Q92935 676 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 GTPBP3Q969Y2 492 aaKnown RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 SGTBQ96EQ0 304 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 SCMH1Q96GD3 660 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 ZNF184Q99676 751 aaPredicted RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 PSD2Q9BQI7 771 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 PRSS27Q9BQR3 290 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 TMEM43Q9BTV4 400 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 TAPBPLQ9BX59 468 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 TEX12Q9BXU0 123 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 UCK2Q9BZX2 261 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms