RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 PCDHAC1Q9H158 963 aa13.08□□□□□ -0.32
SEC13-208ENST00000397109 RNF122Q9H9V4 155 aa13.08□□□□□ -0.32
SEC13-208ENST00000397109 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.08□□□□□ -0.32
SEC13-208ENST00000397109 CCM2LQ9NUG4 571 aaPredicted RBP13.08□□□□□ -0.32
SEC13-208ENST00000397109 KCNE5Q9UJ90 142 aa13.08□□□□□ -0.32
SEC13-208ENST00000397109 MCTS1Q9ULC4 181 aaKnown RBP13.08□□□□□ -0.32
SEC13-208ENST00000397109 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 H0YJX3 145 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 CLIC1O00299 241 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 GMNNO75496 209 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 CYP7B1O75881 506 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 TNFSF13O75888 250 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 BMP2P12643 396 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 PRKCAP17252 672 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 GPX2P18283 190 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 PGCP20142 388 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 GSK3BP49841 420 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 RNF144AP50876 292 aaPredicted RBP13.07□□□□□ -0.32
SEC13-208ENST00000397109 CCR4P51679 360 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 FUT5Q11128 374 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 FADDQ13158 208 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 CAPRIN1Q14444 709 aaKnown RBP13.07□□□□□ -0.32
SEC13-208ENST00000397109 TAF11Q15544 211 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 NDUFAF6Q330K2 333 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 OGFRL1Q5TC84 451 aaPredicted RBP13.07□□□□□ -0.32
SEC13-208ENST00000397109 HBMQ6B0K9 141 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 FRRS1Q6ZNA5 592 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 LILRA2Q8N149 483 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 CNEP1R1Q8N9A8 125 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 OR10D3Q8NH80 312 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 TMEM234Q8WY98 164 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 AURKBQ96GD4 344 aaPredicted RBP13.07□□□□□ -0.32
SEC13-208ENST00000397109 KLHL15Q96M94 604 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 ECSITQ9BQ95 431 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 CPPED1Q9BRF8 314 aaPredicted RBP13.07□□□□□ -0.32
SEC13-208ENST00000397109 RAD21L1Q9H4I0 556 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 GORASP2Q9H8Y8 452 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 TIGARQ9NQ88 270 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 C8orf4Q9NR00 106 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 CORO2BQ9UQ03 480 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 LRCH1Q9Y2L9 728 aa13.07□□□□□ -0.32
SEC13-208ENST00000397109 A8MXE2 369 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 ETV2O00321 342 aaPredicted RBP13.06□□□□□ -0.32
SEC13-208ENST00000397109 H6PDO95479 791 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 C1QCP02747 245 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 UBTFL6P0CB48 400 aaPredicted RBP13.06□□□□□ -0.32
SEC13-208ENST00000397109 NR2F1P10589 423 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 FCGR1AP12314 374 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 MSX2P35548 267 aaPredicted RBP13.06□□□□□ -0.32
SEC13-208ENST00000397109 PCYT1AP49585 367 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 CARD18P57730 90 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 CHRNEQ04844 493 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 SKP2Q13309 424 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 GNA13Q14344 377 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 QPRTQ15274 297 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 MAPK14Q16539 360 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 CTU2Q2VPK5 515 aaKnown RBP13.06□□□□□ -0.32
SEC13-208ENST00000397109 GTF2IRD2BQ6EKJ0 949 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 FKBP9P1Q75LS8 142 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 OLIG3Q7RTU3 272 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 LUZP2Q86TE4 346 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 GTF2IRD2Q86UP8 949 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 FAM156AQ8NDB6 213 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 ST8SIA1Q92185 356 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 OSTF1Q92882 214 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 STARD4Q96DR4 205 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 THUMPD3Q9BV44 507 aaKnown RBP13.06□□□□□ -0.32
SEC13-208ENST00000397109 SLC38A1Q9H2H9 487 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 VCXQ9H320 206 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 IKZF5Q9H5V7 419 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 MTHFD2LQ9H903 347 aaPredicted RBP13.06□□□□□ -0.32
SEC13-208ENST00000397109 GLRX2Q9NS18 164 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 THUMPD1Q9NXG2 353 aaKnown RBP13.06□□□□□ -0.32
SEC13-208ENST00000397109 CALML5Q9NZT1 146 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 FBN2P35556 2912 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 SPG11Q96JI7 2443 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 MYO9AB2RTY4 2548 aa13.06□□□□□ -0.32
SEC13-208ENST00000397109 A0A0J9YW62 118 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 CENPVL1A0A0U1RR11 272 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 PRAMEF27A3QJZ7 478 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 TUBAL3A6NHL2 446 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 TNFSF11O14788 317 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 CXCL13O43927 109 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 SMNDC1O75940 238 aaKnown RBP eCLIP13.05□□□□□ -0.32
SEC13-208ENST00000397109 NTN1O95631 604 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 OPN1LWP04000 364 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 PABPC4LP0CB38 370 aaKnown RBP13.05□□□□□ -0.32
SEC13-208ENST00000397109 SFTPDP35247 375 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 KIR2DL2P43627 348 aaPredicted RBP13.05□□□□□ -0.32
SEC13-208ENST00000397109 KCNJ10P78508 379 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 SELENBP1Q13228 472 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 RGNQ15493 299 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 TOMM34Q15785 309 aaPredicted RBP13.05□□□□□ -0.32
SEC13-208ENST00000397109 SYPL1Q16563 259 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 RABL3Q5HYI8 236 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 COX20Q5RI15 118 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 PPP4R4Q6NUP7 873 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 CMIPQ8IY22 773 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 ANKFN1Q8N957 763 aa13.05□□□□□ -0.32
SEC13-208ENST00000397109 PAPD5Q8NDF8 572 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms