RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FKRPQ9H9S5 495 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 NTN4Q9HB63 628 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ANKRD10Q9NXR5 420 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 KLHL28Q9NXS3 571 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 MEMO1Q9Y316 297 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF337Q9Y3M9 751 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ATMQ13315 3056 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 UBR5O95071 2799 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 TMED7-TICAM2A0A0A6YYA0 188 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 AQP7P3A6NL99 342 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF716A6NP11 495 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 IMPA2O14732 288 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 AHCYL1O43865 530 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 TP53P04637 393 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 PLA2G2AP14555 144 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 OMPP47874 163 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 SLC9A3P48764 834 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 CDH12P55289 794 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 CBX1P83916 185 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 VLDLRP98155 873 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 RAPSNQ13702 412 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ATP6AP1Q15904 470 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 C1orf94Q6P1W5 598 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ENPP6Q6UWR7 440 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 CCDC121Q6ZUS5 278 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 MBOAT2Q6ZWT7 520 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 DOLPP1Q86YN1 238 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 OR2V1Q8NHB1 315 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 CPNE4Q96A23 557 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 KLHL15Q96M94 604 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 CTPS2Q9NRF8 586 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 TMED7Q9Y3B3 224 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 PKD1L2Q7Z442 2459 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ANKRD11Q6UB99 2663 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 KNTC1P50748 2209 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 TRAV36DV7A0A075B6V5 113 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 FAM47E-STBD1D6RA91 191 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 RPL36A-HNRNPH2H7BZ11 118 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 PDLIM1O00151 329 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 SCO2O43819 266 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 GP1BBP13224 206 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 IGFBP2P18065 325 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 SMIM11AP58511 58 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 PMP22Q01453 160 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 PRR30Q53SZ7 412 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 C1orf185Q5T7R7 199 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 MTFR2Q6P444 385 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 FAHD1Q6P587 224 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 TMPPEQ6ZT21 453 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 DDIT4LQ96D03 193 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 LINC00470Q9BZP3 86 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 RLIMQ9NVW2 624 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ALKBH4Q9NXW9 302 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 HCFC1P51610 2035 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 RAI1Q7Z5J4 1906 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 A0A1B0GUH1 482 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 GNB5O14775 395 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 CASQ2O14958 399 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 APEHP13798 732 aaKnown RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 GDF1P27539 372 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 GCKP35557 465 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 IDH2P48735 452 aaKnown RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 KCNJ2P63252 427 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 LTBQ06643 244 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 TFF3Q07654 80 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ST3GAL3Q11203 375 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 NDUFAF6Q330K2 333 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 TMEM211Q6ICI0 200 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ACOT11Q8WXI4 607 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 PROX1Q92786 737 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 RAB3IPQ96QF0 476 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 MEPEQ9NQ76 525 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF71Q9NQZ8 489 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-202ENST00000394943 USE1Q9NZ43 259 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 HIF3AQ9Y2N7 669 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 CORINQ9Y5Q5 1042 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 LYVE1Q9Y5Y7 322 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 APC2O95996 2303 aa6.29□□□□□ -1.4
LIMA1-202ENST00000394943 A0A0J9YW62 118 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SH3PXD2BA1X283 911 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TFECO14948 347 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 EIF1BO60739 113 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 PRKD3O94806 890 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 IFNW1P05000 195 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 CD8BP10966 210 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 EFNB1P98172 346 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SRSF1Q07955 248 aaKnown RBP eCLIP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 C19orf57Q0VDD7 668 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF74Q16587 644 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 C3orf36Q3SXR2 165 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SYT14P1Q58G82 188 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 PAQR6Q6TCH4 344 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 RPTNQ6XPR3 784 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 NMD3Q96D46 503 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 LRR1Q96L50 414 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 MCHR1Q99705 422 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 THTPAQ9BU02 230 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SLC6A15Q9H2J7 730 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 PIGMQ9H3S5 423 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 C8orf4Q9NR00 106 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms