RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 GPR143P51810 404 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 GNG2P59768 71 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 TRA2BP62995 288 aaKnown RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 RNF4P78317 190 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SMN1Q16637 294 aaKnown RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 DUSP7Q16829 419 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 GLYR1Q49A26 553 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 LAIR2Q6ISS4 152 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 KLHL24Q6TFL4 600 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 UBE3DQ7Z6J8 389 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 TMEM179BQ7Z7N9 219 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 GALNT16Q8N428 558 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 PARP16Q8N5Y8 322 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 OR10G3Q8NGC4 313 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 OR4C3Q8NH37 302 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 DNAJB8Q8NHS0 232 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SLC46A1Q96NT5 459 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SNX18Q96RF0 628 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 TMEM246Q9BRR3 403 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 BTBD2Q9BX70 525 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 RPRD1BQ9NQG5 326 aaKnown RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 GPR52Q9Y2T5 361 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 PCDHGB6Q9Y5F9 930 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 A0A1W2PNR3 127 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SNTNA6NMZ2 147 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 CCRL2O00421 344 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 ICOSLGO75144 302 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 C1QCP02747 245 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 F13BP05160 661 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 GADD45AP24522 165 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 UGT2B10P36537 528 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SLC15A1P46059 708 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF619Q8N2I2 560 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 PROKR2Q8NFJ6 384 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 OR8J2Q8NGG1 315 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 GRPEL2Q8TAA5 225 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 MVB12AQ96EY5 273 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 CHCHD6Q9BRQ6 235 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 ASPNQ9BXN1 380 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 POLDIP3Q9BY77 421 aaKnown RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 CRNNQ9UBG3 495 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 TRGV8A0A0C4DH27 118 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ZNHIT1O43257 154 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 TLX3O43711 291 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 WISP3O95389 354 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 HK1P19367 917 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 SDHBP21912 280 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 DNAJA1P31689 397 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 EFNA3P52797 238 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 RAE1P78406 368 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 CFHR1Q03591 330 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 CAMK2BQ13554 666 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 MED22Q15528 200 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 CELF2-AS1Q8N7Q2 184 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 OR4K5Q8NGD3 323 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ERMAPQ96PL5 475 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 OR11A1Q9GZK7 315 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 KLK13Q9UKR3 277 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 CSPG4Q6UVK1 2322 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 C2orf16Q68DN1 1984 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 NYNRINQ9P2P1 1898 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ATXN7O15265 892 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 CD63P08962 238 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 CEACAM1P13688 526 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ZFP36L2P47974 494 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 PCBP4P57723 403 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 PRKCDQ05655 676 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 SRSF6Q13247 344 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 MAD2L1BPQ15013 274 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF528Q3MIS6 628 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ATAD3CQ5T2N8 411 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 TSPYL5Q86VY4 417 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 GRAMD2AQ8IUY3 354 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 OR4K13Q8NH42 304 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ZC3HAV1LQ96H79 300 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 RBM24Q9BX46 236 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 C12orf49Q9H741 205 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 RAXQ9Y2V3 346 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 TMEM184BQ9Y519 407 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 FRMPD3Q5JV73 1810 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 MTCL1Q9Y4B5 1905 aaKnown RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 A0A0A6YYD5 115 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 A0A1W2PPL8 197 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 LRRN3E7EW58 273 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF264O43296 627 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 IFNGP01579 166 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 FPR1P21462 350 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 GALK2Q01415 458 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 TLE3Q04726 772 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 TRAM2Q15035 370 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 SHBQ15464 509 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ACER2Q5QJU3 275 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 SLC6A19Q695T7 634 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 B3GLCTQ6Y288 498 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 GDPD3Q7L5L3 318 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 OR2Y1Q8NGV0 311 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 FEVQ99581 238 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 EPYCQ99645 322 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 C1QTNF6Q9BXI9 259 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 KLHL13Q9P2N7 655 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms