RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 RBM4BQ9BQ04 359 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 RBM4Q9BWF3 364 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PAIP1Q9H074 479 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 FN3KRPQ9HA64 309 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PLEKHA3Q9HB20 300 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 HRASLSQ9HDD0 168 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 MYOZ1Q9NP98 299 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 MARCH4Q9P2E8 410 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SCAMP2O15127 329 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 TOX3O15405 576 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 APOA2P02652 100 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 GKN3PP0CG01 181 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ANXA3P12429 323 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 FUT1P19526 365 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SSTR4P31391 388 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 NR1H2P55055 460 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 NKX3-2P78367 333 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 FGL1Q08830 312 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 MAML2Q8IZL2 1156 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 NPWQ8N729 165 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 KIAA1958Q8N8K9 716 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PSD4Q8NDX1 1056 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 OR4K13Q8NH42 304 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 CNOT9Q92600 299 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 CCDC115Q96NT0 180 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ALS2Q96Q42 1657 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 GATA5Q9BWX5 397 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ABCD2Q9UBJ2 740 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 LOC100509620A0A075B734 347 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 IGHV5-10-1A0A0J9YXX1 117 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 A0A1B0GTH9 108 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ABLIM1O14639 778 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 AIFM1O95831 613 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PIPP12273 146 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 ANXA8P13928 327 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 MRPL58Q14197 206 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 NRF1Q16656 503 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 MICAQ29983 383 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC6A19Q695T7 634 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 AWAT2Q6E213 333 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC27A4Q6P1M0 643 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 UGT2A3Q6UWM9 527 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 FBXO27Q8NI29 283 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 RFT1Q96AA3 541 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 PIP5K1AQ99755 562 aa8.52□□□□□ -1.05
LIMCH1-202ENST00000381753 TSPAN9O75954 239 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 NCK1P16333 377 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 RNPS1Q15287 305 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 CYP1B1Q16678 543 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 METRNLQ641Q3 311 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 FAM57BQ71RH2 274 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLCO6A1Q86UG4 719 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 LMNTD1Q8N9Z9 388 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 OR2T33Q8NG76 320 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 FNDC8Q8TC99 324 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 HES4Q9HCC6 221 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 POMT2Q9UKY4 750 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 TBC1D24Q9ULP9 559 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 COL22A1Q8NFW1 1626 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF487B1APH4 448 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 PDLIM4P50479 330 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 ADARB1P78563 741 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC25A3Q00325 362 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC34A1Q06495 639 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 ANKDD1AQ495B1 522 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SPANXN4Q5MJ08 99 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 RFLNAQ6ZTI6 216 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 FAM217AQ8IXS0 508 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 AQP11Q8NBQ7 271 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SSC4DQ8WTU2 575 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 CPNE4Q96A23 557 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC35A4Q96G79 324 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC41A3Q96GZ6 507 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 MRPS18BQ9Y676 258 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLITRK5O94991 958 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 CCR7P32248 378 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 TSFMP43897 325 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 AGERQ15109 404 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 PTPRRQ15256 657 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 DEFB121Q5J5C9 76 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 PRSS36Q5K4E3 855 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 CCNJQ5T5M9 372 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC25A44Q96H78 314 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 DDA1Q9BW61 102 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 IL21Q9HBE4 155 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 NUP188Q5SRE5 1749 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 IGHV3-64DA0A0J9YX35 117 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 ZCWPW2A0A1B0GU75 182 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 C5orf51A6NDU8 294 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 B4E171 279 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SPINT2O43291 252 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 PRH1P02810 166 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 TSPAN7P41732 249 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 OR1E2P47887 323 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 TLE4Q04727 773 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 E2F2Q14209 437 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 BCL7AQ4VC05 210 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 RAB12Q6IQ22 244 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC36A1Q7Z2H8 476 aa8.51□□□□□ -1.05
LIMCH1-202ENST00000381753 TRIM46Q7Z4K8 759 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms