RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ANP32DO95626 131 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 IL7RP16871 459 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 IL32P24001 234 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 ITGADQ13349 1161 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 MRPL2Q5T653 305 aaKnown RBP19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF704Q6ZNC4 412 aaPredicted RBP19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 Q6ZT83 130 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 GALNT5Q7Z7M9 940 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 MIER2Q8N344 545 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 KISS1RQ969F8 398 aaPredicted RBP19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF775Q96BV0 537 aaPredicted RBP19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 OR11A1Q9GZK7 315 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 P2RX2Q9UBL9 471 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 PRSS50Q9UI38 385 aa19.24■□□□□ 0.67
CCDC28B-201ENST00000373602 IGKV3D-15A0A087WSY6 115 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 ARHGEF9O43307 516 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 DNPH1O43598 174 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 PLAUP00749 431 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 ETFAP13804 333 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 EDNRAP25101 427 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 TAB1Q15750 504 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 GTDC1Q4AE62 458 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 PEX5LQ8IYB4 626 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 HSD17B8Q92506 261 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 VPS33AQ96AX1 596 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 ZHX1-C8orf76Q96EF9 292 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 USB1Q9BQ65 265 aaKnown RBP19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 CALML5Q9NZT1 146 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 OSGIN1Q9UJX0 560 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 DSPPQ9NZW4 1301 aa19.23■□□□□ 0.67
CCDC28B-201ENST00000373602 DSCAMO60469 2012 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 ROS1P08922 2347 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 TMED7-TICAM2A0A0A6YYA0 188 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 FAM234BA2RU67 622 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 CFAP73A6NFT4 308 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF716A6NP11 495 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF208O43345 1280 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 CNOT4O95628 575 aaKnown RBP19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 TFPTP0C1Z6 253 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 CCNA2P20248 432 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 SLC1A3P43003 542 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 CRATP43155 626 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 MRPL19P49406 292 aaKnown RBP19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 POLR2HP52434 150 aaKnown RBP19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 DSTNP60981 165 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 EPS8Q12929 822 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 BHLHA15Q7RTS1 189 aaPredicted RBP19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 P3H2Q8IVL5 708 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF440Q8IYI8 595 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 SLC38A5Q8WUX1 472 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 IGFBPL1Q8WX77 278 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 AURKBQ96GD4 344 aaPredicted RBP19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 ATP6V1G3Q96LB4 118 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 EMC3Q9P0I2 261 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 TMEM181Q9P2C4 612 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 TRAPPC4Q9Y296 219 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 TMED7Q9Y3B3 224 aa19.22■□□□□ 0.67
CCDC28B-201ENST00000373602 TGDSO95455 350 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 UQCRBP14927 111 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 TACR3P29371 465 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 MAP2K6P52564 334 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 CRISP3P54108 245 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 Q5PR19 223 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 C6orf10Q5SRN2 563 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 ALKBH2Q6NS38 261 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 ZNF100Q8IYN0 542 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 OR52P1PQ8NH57 321 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 PIGXQ8TBF5 258 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 LRRC8CQ8TDW0 803 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 GTF2H4Q92759 462 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 DNAJA3Q96EY1 480 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 POTEKPQ9BYX7 375 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 ADAM19Q9H013 955 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 SLCO1B3Q9NPD5 702 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 NGBQ9NPG2 151 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 TCF7L2Q9NQB0 619 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 THUMPD1Q9NXG2 353 aaKnown RBP19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 PRDM4Q9UKN5 801 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 ARID1AO14497 2285 aa19.21■□□□□ 0.67
CCDC28B-201ENST00000373602 TMEM72A0PK05 275 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 CDHR4A6H8M9 788 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 BCHEP06276 602 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 COX5AP20674 150 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 SLC16A1P53985 500 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 OR2B6P58173 313 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 H3F3AP84243 136 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 LIN52Q52LA3 116 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 NCMAPQ5T1S8 102 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 PRSS57Q6UWY2 283 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 SEZ6L2Q6UXD5 910 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 ZNF836Q6ZNA1 936 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 VRK2Q86Y07 508 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 DDIT4LQ96D03 193 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 PAIP1Q9H074 479 aaKnown RBP19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 GSX1Q9H4S2 264 aaPredicted RBP19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 RLIMQ9NVW2 624 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 PCDHB14Q9Y5E9 798 aa19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 SETD2Q9BYW2 2564 aaPredicted RBP19.2■□□□□ 0.66
CCDC28B-201ENST00000373602 GPR171O14626 319 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms