RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 CXCL14O95715 111 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 RAG2P55895 527 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 NRG3P56975 720 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 TRA2BP62995 288 aaKnown RBP12.66□□□□□ -0.38
USP49-201ENST00000373006 HTR4Q13639 388 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 MAPK14Q16539 360 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 SLC48A1Q6P1K1 146 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 MEIOBQ8N635 442 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 KREMEN2Q8NCW0 462 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 SFXN5Q8TD22 340 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 BRIX1Q8TDN6 353 aaKnown RBP12.66□□□□□ -0.38
USP49-201ENST00000373006 C2CD4CQ8TF44 421 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 NR4A3Q92570 626 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 ZMYND19Q96E35 227 aaPredicted RBP12.66□□□□□ -0.38
USP49-201ENST00000373006 ZNF764Q96H86 408 aaPredicted RBP12.66□□□□□ -0.38
USP49-201ENST00000373006 RNF208Q9H0X6 261 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 SLC25A18Q9H1K4 315 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 PIPOXQ9P0Z9 390 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 PCCBP05166 539 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 ERGP11308 486 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 F3P13726 295 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 HTR2AP28223 471 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 ZNF136P52737 540 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 ST8SIA6P61647 398 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 PRDX1Q06830 199 aaKnown RBP12.66□□□□□ -0.38
USP49-201ENST00000373006 ABHD17CQ6PCB6 329 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 FAM198BQ6UWH4 519 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 TMEM151BQ8IW70 566 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 CMIPQ8IY22 773 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 LNX2Q8N448 690 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 OR7G2Q8NG99 324 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 OR2A1Q8NGT9 310 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 ZNF296Q8WUU4 475 aaPredicted RBP12.66□□□□□ -0.38
USP49-201ENST00000373006 TMEM239Q8WW34 195 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 ACTRT3Q9BYD9 372 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 NOX3Q9HBY0 568 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 MLXQ9UH92 298 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 CES1P1Q9UKY3 287 aa12.66□□□□□ -0.38
USP49-201ENST00000373006 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 MFSD2BA6NFX1 497 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 PSMD9O00233 223 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 SMAD9O15198 467 aaKnown RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 KHDRBS3O75525 346 aaKnown RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 PPP1R3DO95685 299 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 LPLP06858 475 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 SLC35G4P0C7Q5 338 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 NFYAP23511 347 aaPredicted RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 PSMB10P40306 273 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 NAA10P41227 235 aaPredicted RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 PSMA6P60900 246 aaKnown RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 DYRK1AQ13627 763 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 ZNF273Q14593 569 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 ARHGAP19Q14CB8 494 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 SLC6A19Q695T7 634 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 CNOT9Q92600 299 aaKnown RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 GIMAP5Q96F15 307 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 CMC2Q9NRP2 79 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 CALML5Q9NZT1 146 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 ABRACLQ9P1F3 81 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 ZNF780BQ9Y6R6 833 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 PLSCR5A0PG75 271 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 ARPC5O15511 151 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 VEGFDO43915 354 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 STX11O75558 287 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 ZP3P21754 424 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 CAPZA2P47755 286 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 SNRPNP63162 240 aaKnown RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 TRAM1Q15629 374 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 HSD17B12Q53GQ0 312 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 C12orf40Q86WS4 652 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 ZFP82Q8N141 532 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 OR52B4Q8NGK2 314 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 OR10Z1Q8NGY1 313 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 OR4C6Q8NH72 309 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 BPIFA2Q96DR5 249 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 LRIG1Q96JA1 1093 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 PCBD2Q9H0N5 130 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 FN3KQ9H479 309 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 KRCC1Q9NPI7 259 aaPredicted RBP12.65□□□□□ -0.38
USP49-201ENST00000373006 FBXO34Q9NWN3 711 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 KIF25Q9UIL4 384 aa12.65□□□□□ -0.38
USP49-201ENST00000373006 EGFP01133 1207 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 ACRP10323 421 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 ADRB3P13945 408 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 TAS2R43P59537 309 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 ERVK-25P63136 954 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 TCEAL5Q5H9L2 206 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 STPG1Q5TH74 334 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 PRAMEF8Q5VWM4 474 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 PRAMEF7Q5VXH5 474 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 METRNLQ641Q3 311 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 FCRLAQ7L513 359 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 GRHL3Q8TE85 626 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 C7orf50Q9BRJ6 194 aaKnown RBP12.65□□□□□ -0.39
USP49-201ENST00000373006 IER2Q9BTL4 223 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 MTHFD2LQ9H903 347 aaPredicted RBP12.65□□□□□ -0.39
USP49-201ENST00000373006 NPDC1Q9NQX5 325 aaPredicted RBP12.65□□□□□ -0.39
USP49-201ENST00000373006 ST6GALNAC2Q9UJ37 374 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 PCDHGA5Q9Y5G8 931 aa12.65□□□□□ -0.39
USP49-201ENST00000373006 RIIAD1A6NNX1 92 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms