RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TMEM269A0A1B0GVZ9 245 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 AIFM1O95831 613 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 IFNA4P05014 189 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 FURINP09958 794 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 TPT1P13693 172 aaKnown RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SQSTM1Q13501 440 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 MBTPS1Q14703 1052 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 ABHD12BQ7Z5M8 362 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 LKAAEAR1Q8TD35 194 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 UHRF1Q96T88 793 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 CDCA3Q99618 268 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 ST6GALNAC5Q9BVH7 336 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 MKRN2Q9H000 416 aaKnown RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 PRDM9Q9NQV7 894 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 CPNE7Q9UBL6 633 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 CBLCQ9ULV8 474 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 HMX2A2RU54 273 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 P2RX6O15547 441 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 AP1G1O43747 822 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 CRYZL1O95825 349 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 KLKB1P03952 638 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 OPRD1P41143 372 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 FCRLAQ7L513 359 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF740Q8NDX6 193 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 TBC1D20Q96BZ9 403 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SGCZQ96LD1 299 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 EMC3Q9P0I2 261 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF281Q9Y2X9 895 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 HEMK1Q9Y5R4 338 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 B3GALT1Q9Y5Z6 326 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 MEIS3P1A6NDR6 274 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 LAMTOR5O43504 91 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 MT-ND4P03905 459 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 RAC2P15153 192 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 HLA-DMAP28067 261 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 HTR3AP46098 478 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 PSPHP78330 225 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 OR7A5Q15622 319 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SLC22A6Q4U2R8 563 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SYT6Q5T7P8 510 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 ABHD17BQ5VST6 288 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF695Q8IW36 515 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 LILRB2Q8N423 598 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 BIN3Q9NQY0 253 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SPATA6Q9NWH7 488 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 MYH9P35579 1960 aaKnown RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 CDHR4A6H8M9 788 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SEC14L2O76054 403 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 OTX2P32243 289 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 ARL3P36405 182 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 NUDT1P36639 197 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 LHX8Q68G74 356 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 OR7E24Q6IFN5 339 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 TDHQ8IZJ6 230 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 OR6F1Q8NGZ6 308 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 INSM2Q96T92 566 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF334Q9HCZ1 680 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 STARD5Q9NSY2 213 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SLC6A14Q9UN76 642 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 PRSS38A1L453 326 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SYT5O00445 386 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 FZD7O75084 574 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SCG5P05408 212 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 PSMB1P20618 241 aaKnown RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 RBMS1P29558 406 aaKnown RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 CAV3P56539 151 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 HENMT1Q5T8I9 393 aaKnown RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SIMC1Q8NDZ2 872 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 OR13C2Q8NGS9 318 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 NANOS1Q8WY41 292 aaKnown RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 CENPOQ9BU64 300 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 ELOVL3Q9HB03 270 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 SIDT1Q9NXL6 827 aaKnown RBP10.66□□□□□ -0.7
PTPRF-203ENST00000372407 NDUFAF4Q9P032 175 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 A3GALT2U3KPV4 340 aa10.66□□□□□ -0.7
PTPRF-203ENST00000372407 LTBQ06643 244 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 AGAP7PQ5VUJ5 663 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 STEAP3Q658P3 488 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 HBMQ6B0K9 141 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 APOOLQ6UXV4 268 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 LINC00299Q6ZSB3 139 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 MRPL21Q7Z2W9 205 aaKnown RBP10.65□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF546Q86UE3 836 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 BPIFB2Q8N4F0 458 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 LMNTD1Q8N9Z9 388 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 ASB17Q8WXJ9 295 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 IGLV3-10A0A075B6K4 115 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 H0YGG7 62 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 ACTL6BO94805 426 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 OR2T7P0C7T2 308 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 CSNK1A1P48729 337 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 CX3CR1P49238 355 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 DCAF7P61962 342 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 FOXK1P85037 733 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 PDE7AQ13946 482 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 POU4F3Q15319 338 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 RPE65Q16518 533 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 RFLNAQ6ZTI6 216 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 OR6V1Q8N148 313 aa10.65□□□□□ -0.7
PTPRF-203ENST00000372407 OR1J4Q8NGS1 313 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms