RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 GNPDA2Q8TDQ7 276 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 KCTD7Q96MP8 289 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF582Q96NG8 517 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 DEPDC7Q96QD5 511 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 WFDC6Q9BQY6 131 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 MED18Q9BUE0 208 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 G6PC3Q9BUM1 346 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 SRRQ9GZT4 340 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC22A4Q9H015 551 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 SAP130Q9H0E3 1048 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 TPK1Q9H3S4 243 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 WDR54Q9H977 334 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 FGF20Q9NP95 211 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 EXOSC1Q9Y3B2 195 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 FAM186AA6NE01 2351 aa12.1□□□□□ -0.47
SQSTM1-201ENST00000360718 IGHV3-20A0A0C4DH32 117 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC30A4O14863 429 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 IDH3BO43837 385 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 BRINP1O60477 761 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 DDAH2O95865 285 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 MT-CO3P00414 261 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 THBS1P07996 1170 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 TRAPPC2P0DI81 140 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 TRAPPC2BP0DI82 140 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 NR4A2P43354 598 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 RPS5P46782 204 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC9A3P48764 834 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 EIF3IQ13347 325 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 DOC2BQ14184 412 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SF3B4Q15427 424 aaKnown RBP eCLIP12.09□□□□□ -0.474e-9■■■■□ 26.7
SQSTM1-201ENST00000360718 PDZK1Q5T2W1 519 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 HES3Q5TGS1 186 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 HLA-DQA1Q5Y7H0 255 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 FAM131AQ6UXB0 335 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 BCDIN3DQ7Z5W3 292 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 VRK2Q86Y07 508 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 LAX1Q8IWV1 398 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 IQCF1Q8N6M8 205 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 TEX47Q8TBZ9 253 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC38A2Q96QD8 506 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 TAAR9Q96RI9 348 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SPSB2Q99619 263 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 CRB3Q9BUF7 120 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 TEX12Q9BXU0 123 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 C19orf25Q9UFG5 118 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF443Q9Y2A4 671 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SPIN1Q9Y657 262 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SPAARA0A1B0GVQ0 90 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 TMEM129A0AVI4 362 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 FAM172BPA6NC97 362 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 FABP12A6NFH5 140 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 WWP2O00308 870 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 RGS13O14921 159 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 PRODHO43272 600 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 GUSBP08236 651 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 CT45A8P0DMV1 189 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 CT45A9P0DMV2 189 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 PPICP45877 212 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 DCAF7P61962 342 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 EFNB1P98172 346 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 FLYWCH1Q4VC44 716 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 CT45A2Q5DJT8 189 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF362Q5T0B9 420 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 DDI2Q5TDH0 399 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 MRPL14Q6P1L8 145 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 NPSR1Q6W5P4 371 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SLC29A4Q7RTT9 530 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 GLRX5Q86SX6 157 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 OR4N2Q8NGD1 307 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 OR1N1Q8NGS0 311 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 OR6F1Q8NGZ6 308 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 TMEM163Q8TC26 289 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 ZNF721Q8TF20 911 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 KIAA1143Q96AT1 154 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SNX18Q96RF0 628 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 PISDQ9UG56 409 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 MRTO4Q9UKD2 239 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 CBLCQ9ULV8 474 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 GPR55Q9Y2T6 319 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 CEP250Q9BV73 2442 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 SDK2Q58EX2 2172 aa12.09□□□□□ -0.47
SQSTM1-201ENST00000360718 CCDC187A0A096LP49 1063 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 CENPVL1A0A0U1RR11 272 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 OR6C76A6NM76 312 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 EPPINO95925 133 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 IGKV3-11P04433 115 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 DDOSTP39656 456 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ETV1P50549 477 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 NKX2-5P52952 324 aaPredicted RBP12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 MXD1Q05195 221 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 TPBGQ13641 420 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 NNATQ16517 81 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 TMEM44Q2T9K0 475 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 TMEM164Q5U3C3 297 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ACSM5Q6NUN0 579 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 SLC27A4Q6P1M0 643 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 FAM198BQ6UWH4 519 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 RRM2BQ7LG56 351 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ASCL5Q7RTU5 278 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ANKRD37Q7Z713 158 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms