RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TRIOO75962 3097 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 A0A087WUJ7 227 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 RPS5P46782 204 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 GPR143P51810 404 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 SLC3A1Q07837 685 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 RIN1Q13671 783 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 IL18Q14116 193 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 FAM27D1Q5T7N8 215 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 SSX6Q7RTT6 188 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 UBE2J2Q8N2K1 259 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 ABHD4Q8TB40 342 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 ACOT12Q8WYK0 555 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 B3GAT2Q9NPZ5 323 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 IER3IP1Q9Y5U9 82 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 IGHV5-51A0A0C4DH38 117 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 LILRA5A6NI73 299 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 B4DXG7 233 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 LRRN3E7EW58 273 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 CLPSP04118 112 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 IFNA16P05015 189 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 MLLT3P42568 568 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 NR4A2P43354 598 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 KIR2DL3P43628 341 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 GFERP55789 205 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 TAS2R43P59537 309 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 ACTC1P68032 377 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 ACTA1P68133 377 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 POU4F2Q12837 409 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 GAS6Q14393 721 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 IDNKQ5T6J7 187 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 RPTNQ6XPR3 784 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 GKN2Q86XP6 184 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 SDR9C7Q8NEX9 313 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 SPRTNQ9H040 489 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 LRRN3Q9H3W5 708 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 PCDHGB7Q9Y5F8 929 aa19.12■□□□□ 0.65
CCDC88B-203ENST00000359902 MCIDASD6RGH6 385 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 SLC19A2O60779 497 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 HCCSP53701 268 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 TRAM1Q15629 374 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 ZSCAN1Q8NBB4 408 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 FAM98AQ8NCA5 519 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 OR5J2Q8NH18 312 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 TGM7Q96PF1 710 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 THADAQ6YHU6 1953 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 A0A1W2PR77 199 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 PRKNO60260 465 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 ZNF217O75362 1048 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 ELK1P19419 428 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 CD38P28907 300 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 KLHL26Q53HC5 615 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 HBMQ6B0K9 141 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 DMKNQ6E0U4 476 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 CEACAM19Q7Z692 300 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 RFLNBQ8N5W9 214 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 ZMYND19Q96E35 227 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 PGLYRP3Q96LB9 341 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 LMAN1LQ9HAT1 526 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 SOHLH2Q9NX45 425 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 ZNF221Q9UK13 617 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 ADAM30Q9UKF2 790 aa19.11■□□□□ 0.65
CCDC88B-203ENST00000359902 SC5DO75845 299 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 KRT8P05787 483 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 CD27P26842 260 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 PYCR1P32322 319 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 ACVR1BP36896 505 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 ATAD3CQ5T2N8 411 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 TRIQKQ629K1 86 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 C19orf18Q8NEA5 215 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 LRFN5Q96NI6 719 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 LMF1Q96S06 567 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 CTRCQ99895 268 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 SYNDIG1Q9H7V2 258 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 NEK6Q9HC98 313 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 ADAM18Q9Y3Q7 739 aa19.1■□□□□ 0.65
CCDC88B-203ENST00000359902 TFP02787 698 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 MAOBP27338 520 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 CD1CP29017 333 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 PPM1FP49593 454 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 TMEM53Q6P2H8 277 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 PXKQ7Z7A4 578 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 ZNF687Q8N1G0 1237 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 C3orf49Q96BT1 292 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 ST6GAL2Q96JF0 529 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 TMEM43Q9BTV4 400 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 MOV10Q9HCE1 1003 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 SLC2A4RGQ9NR83 387 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 KLHL21Q9UJP4 597 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 NOX1Q9Y5S8 564 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 HEATR5AQ86XA9 2040 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 FAM25AB3EWG3 89 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 FAM25CB3EWG5 89 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 FAM25GB3EWG6 89 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 PPM1BO75688 479 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 ATXN8OSP0DMR3 200 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 GALNSP34059 522 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 THBS2P35442 1172 aa19.09■□□□□ 0.65
CCDC88B-203ENST00000359902 CAPZA2P47755 286 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms