RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 KLHL12Q53G59 568 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 HEPHL1Q6MZM0 1159 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 GID4Q8IVV7 300 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 NFAM1Q8NET5 270 aaPredicted RBP8.37□□□□□ -1.07
UPF2-202ENST00000357604 OR2M3Q8NG83 312 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 MFSD8Q8NHS3 518 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 FAM57AQ8TBR7 257 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 ACOT11Q8WXI4 607 aaPredicted RBP8.37□□□□□ -1.07
UPF2-202ENST00000357604 TSPAN10Q9H1Z9 355 aaPredicted RBP8.37□□□□□ -1.07
UPF2-202ENST00000357604 CTPS2Q9NRF8 586 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 SLC22A23A1A5C7 686 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 OR7A10O76100 309 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 CHRM4P08173 479 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 FUT1P19526 365 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 IL12AP29459 219 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 CEACAM7Q14002 265 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 SLC36A2Q495M3 483 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 COX20Q5RI15 118 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 STEAP2Q8NFT2 490 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 OR2B2Q9GZK3 357 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 SLITRK2Q9H156 845 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 SEC61A2Q9H9S3 476 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 TNFRSF12AQ9NP84 129 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 DCAF13Q9NV06 445 aaKnown RBP8.37□□□□□ -1.07
UPF2-202ENST00000357604 CMTM6Q9NX76 183 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 SLC5A6Q9Y289 635 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 AMDHD2Q9Y303 409 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 TPRKBQ9Y3C4 175 aa8.37□□□□□ -1.07
UPF2-202ENST00000357604 ZNF670-ZNF695F2Z2N8 137 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 PRAMEF4O60810 478 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 HPNP05981 417 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 TFPTP0C1Z6 253 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 ESRRGP62508 458 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 IL5RAQ01344 420 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 PRAMEF9Q5VWM5 478 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 NIPAL3Q6P499 406 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 GALNT4Q8N4A0 578 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 OR2T33Q8NG76 320 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 OR5M9Q8NGP3 310 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 GMPPAQ96IJ6 420 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 ACKR4Q9NPB9 350 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 NOP16Q9Y3C1 178 aaKnown RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 C4orf51C9J302 202 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 PDLIM1O00151 329 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 TSPAN2O60636 221 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 IGKV3-11P04433 115 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 RFC3P40938 356 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 CLDN17P56750 224 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 COX10Q12887 443 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 TMEM81Q6P7N7 255 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 C8orf59Q8N0T1 100 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 SVOPQ8N4V2 548 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 AQP11Q8NBQ7 271 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 MAGEE2Q8TD90 523 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 SLC6A15Q9H2J7 730 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 FAIMQ9NVQ4 179 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 NTMQ9P121 344 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 PACSIN3Q9UKS6 424 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 PCDH15Q96QU1 1955 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 A0A1B0GTH9 108 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 C2orf72A6NCS6 295 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 C12orf71A8MTZ7 269 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 IDH3BO43837 385 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 KHDRBS3O75525 346 aaKnown RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 LGI1O95970 557 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 F8A1P23610 371 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 VHLP40337 213 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 LY6DQ14210 128 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 KPNB1Q14974 876 aaKnown RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 SGCAQ16586 387 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 HGDQ93099 445 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 MYDGFQ969H8 173 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 ZNF566Q969W8 418 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 ARSGQ96EG1 525 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 CPNE2Q96FN4 548 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 PRR23D1E9PI22 279 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 M0R3H8 397 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 MYL12BO14950 172 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 MGRN1O60291 552 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 ADAP00813 363 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 CELA2AP08217 269 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 PRR23D2P0DMB1 279 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 PPP3CBP16298 524 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 TNFSF4P23510 183 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 SH3BGRP55822 239 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 SLC6A19Q695T7 634 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 SMARCD3Q6STE5 483 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 OR5L1Q8NGL2 311 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 WNT2BQ93097 391 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 GTPBP3Q969Y2 492 aaKnown RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 COG8Q96MW5 612 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 SF3B5Q9BWJ5 86 aaKnown RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 QRSL1Q9H0R6 528 aaKnown RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 FKRPQ9H9S5 495 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 SIRT3Q9NTG7 399 aaPredicted RBP8.36□□□□□ -1.07
UPF2-202ENST00000357604 CEP192Q8TEP8 1941 aa8.36□□□□□ -1.07
UPF2-202ENST00000357604 A0A1B0GWA3 101 aa8.35□□□□□ -1.07
UPF2-202ENST00000357604 CENPBD1B2RD01 187 aa8.35□□□□□ -1.07
UPF2-202ENST00000357604 TPD52L2O43399 206 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms