RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 HCRTR1O43613 425 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PRKRAO75569 313 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SERPIND1P05546 499 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SLC35G6P0C7Q6 338 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 KIR3DL1P43629 444 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PCP4P48539 62 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SNRPNP63162 240 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 GPR176Q14439 515 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SHQ1Q6PI26 577 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 ZC3H14Q6PJT7 736 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 C12orf45Q8N5I9 185 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 KCT2Q8NC54 265 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 OR2T4Q8NH00 348 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 FCGR1BQ92637 280 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 CCDC74AQ96AQ1 378 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 AHCYL2Q96HN2 611 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 MEGF10Q96KG7 1140 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 BHLHE41Q9C0J9 482 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 KCNH6Q9H252 994 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 REEP1Q9H902 201 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 C3orf14Q9HBI5 128 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 BIN3Q9NQY0 253 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 FAM120CQ9NX05 1096 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 RHCGQ9UBD6 479 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 GHRLQ9UBU3 117 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 IGHV5-51A0A0C4DH38 117 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 FAM227AF5H4B4 570 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 CASKO14936 926 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 EEF1E1O43324 174 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 DUX1O43812 170 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SRPX2O60687 465 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 IL3P08700 152 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 IGFBP1P08833 259 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 NMBP08949 121 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 LAMP1P11279 417 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 MYF5P13349 255 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 COX7A2P14406 83 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 ENGP17813 658 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 CSF2RBP32927 897 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SLC14A1Q13336 389 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 LPAL2Q16609 132 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 ACER2Q5QJU3 275 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 TRIM40Q6P9F5 258 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 ACOT4Q8N9L9 421 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 OR9Q2Q8NGE9 314 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 OR2I1PQ8NGU4 316 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 FBLIM1Q8WUP2 373 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 TGM7Q96PF1 710 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PELOQ9BRX2 385 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 NKX6-2Q9C056 277 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 OR51J1Q9H342 316 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 DCAF13Q9NV06 445 aaKnown RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 BTNL2Q9UIR0 455 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 KLF2Q9Y5W3 355 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 URADA6NGE7 173 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SOX14O95416 240 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 STATHP02808 62 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 GIFP27352 417 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 BTG1P62324 171 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 MC1RQ01726 317 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 TGM3Q08188 693 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 LRRC74AQ0VAA2 488 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 CAMK2DQ13557 499 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PUM1Q14671 1186 aaKnown RBP eCLIP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 TRAM2Q15035 370 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PRSS53Q2L4Q9 553 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PRTGQ2VWP7 1150 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 CRTC2Q53ET0 693 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 ZNF385BQ569K4 471 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 CPTPQ5TA50 214 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 OR4F3Q6IEY1 312 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 TMEM91Q6ZNR0 172 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 ZER1Q7Z7L7 766 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PLXDC1Q8IUK5 500 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 MSRB3Q8IXL7 192 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SPPL2AQ8TCT8 520 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 PMM1Q92871 262 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 RERGQ96A58 199 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-203ENST00000354674 CCDC115Q96NT0 180 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 NIPSNAP1Q9BPW8 284 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 INPP5KQ9BT40 448 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 MED18Q9BUE0 208 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SEMA4CQ9C0C4 833 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 MUC13Q9H3R2 512 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 SSR3Q9UNL2 185 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 FLVCR2Q9UPI3 526 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 R4GN57 208 aa9.34□□□□□ -0.91
SYNE1-203ENST00000354674 COL5A1P20908 1838 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-203ENST00000354674 RNASET2O00584 256 aaKnown RBP9.33□□□□□ -0.92
SYNE1-203ENST00000354674 GPR37O15354 613 aa9.33□□□□□ -0.92
SYNE1-203ENST00000354674 ARPC5O15511 151 aa9.33□□□□□ -0.92
SYNE1-203ENST00000354674 ADRB1P08588 477 aa9.33□□□□□ -0.92
SYNE1-203ENST00000354674 ZNF888P0CJ79 500 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-203ENST00000354674 FRKP42685 505 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-203ENST00000354674 PTGFRP43088 359 aa9.33□□□□□ -0.92
SYNE1-203ENST00000354674 SSR2P43308 183 aa9.33□□□□□ -0.92
SYNE1-203ENST00000354674 CXCR4P61073 352 aa9.33□□□□□ -0.92
SYNE1-203ENST00000354674 SIM1P81133 766 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-203ENST00000354674 KEAP1Q14145 624 aa9.33□□□□□ -0.92
SYNE1-203ENST00000354674 GUSBP11Q6P575 273 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms