RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 BPIFB2Q8N4F0 458 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 RELL2Q8NC24 303 aaPredicted RBP8.13□□□□□ -1.11
RTN3-202ENST00000339997 BRIX1Q8TDN6 353 aaKnown RBP8.13□□□□□ -1.11
RTN3-202ENST00000339997 CDC6Q99741 560 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 QPCTLQ9NXS2 382 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 FAM230AA0A1W2PPH8 454 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 CCDC85CA6NKD9 419 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 NPIPA2E9PIF3 369 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 NPIPA3F8WFD2 350 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 FZD9O00144 591 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 CLN5O75503 358 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 GABARAPO95166 117 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 KLF8O95600 359 aaPredicted RBP8.13□□□□□ -1.11
RTN3-202ENST00000339997 SLC1A3P43003 542 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 GSTM4Q03013 218 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 HTR4Q13639 388 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 STEAP2Q8NFT2 490 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 OR13C9Q8NGT0 318 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 GPR148Q8TDV2 347 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 SLC38A1Q9H2H9 487 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 GCM1Q9NP62 436 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 TMPRSS11EQ9UL52 423 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 RNF215Q9Y6U7 377 aa8.13□□□□□ -1.11
RTN3-202ENST00000339997 ACOT7O00154 380 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 HSPB6O14558 160 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 CSO75390 466 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 MED6O75586 246 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TCRBP04435 133 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 SERPINA5P05154 406 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 CFL1P23528 166 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 HOXD11P31277 338 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 MAGEB1P43366 347 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 PGFP49763 221 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 NKX6-1P78426 367 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 ECH1Q13011 328 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 EBPQ15125 230 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 C9orf135Q5VTT2 229 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ZNF704Q6ZNC4 412 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 ABHD12BQ7Z5M8 362 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 LIX1LQ8IVB5 337 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 OR6T1Q8NGN1 323 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 SLC7A6Q92536 515 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 DIO2Q92813 273 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 NINJ1Q92982 152 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TNFRSF13CQ96RJ3 184 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 VRK1Q99986 396 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 ALOXE3Q9BYJ1 711 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ZNF768Q9H5H4 540 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 SH3BGRL2Q9UJC5 107 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 MYH1P12882 1939 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 CHD4Q14839 1912 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 MYH4Q9Y623 1939 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 METTL15A6NJ78 407 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 RNASET2O00584 256 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 SYPP08247 313 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 EDN3P14138 238 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ANXA7P20073 488 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 NFYAP23511 347 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 MLLT11Q13015 90 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 RUNX2Q13950 521 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 CRMP1Q14194 572 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 OXA1LQ15070 435 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TRAM1Q15629 374 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 CLLU1OSQ5K130 101 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 OTUD1Q5VV17 481 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 SLC18B1Q6NT16 456 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 FAM111BQ6SJ93 734 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 IDO2Q6ZQW0 420 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 RHOUQ7L0Q8 258 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 OR4M1Q8NGD0 313 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 OR56B2PQ8NGI1 322 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 HCAR1Q9BXC0 346 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 PTGES2Q9H7Z7 377 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 MYNNQ9NPC7 610 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 MRPS17Q9Y2R5 130 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 FITM1A5D6W6 292 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 OR6C6A6NF89 314 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 HHLA1C9JL84 531 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TO15178 435 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TGM5O43548 720 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 PRAMEF2O60811 474 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ITGAMP11215 1152 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 DRD2P14416 443 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ZNF28P17035 718 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ARNTP27540 789 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 CLDN6P56747 220 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 YIF1BQ5BJH7 314 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 KCTD11Q693B1 232 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 METAP1DQ6UB28 335 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 ALDH16A1Q8IZ83 802 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 SIMC1Q8NDZ2 872 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TMEM106AQ96A25 262 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 KLHDC7BQ96G42 594 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ZNF578Q96N58 590 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 NMNAT3Q96T66 252 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TMEM175Q9BSA9 504 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 C11orf84Q9BUA3 381 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 PLEKHJ1Q9NW61 149 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 SERTAD3Q9UJW9 196 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ZNF175Q9Y473 711 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms